Fish Single-cell RNA Database

GENE ID: ENSDARG00000002193

Symbol	Location	Gene type	Genome version	Species
rho	8: 54076195 ~ 54077740 (-)	protein_coding	GRCz11	Danio rerio

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000002193 (rho), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

Gene ID	Symbol	Location
ENSDARG00000045677	opn1sw1	4: 13577665 ~ 13580348 (-)
ENSDARG00000045909	dynlt1	4: 386435 ~ 390442 (-)
ENSDARG00000104685	grk1b	5: 54161362 ~ 54197084 (-)
ENSDARG00000019752	rom1a	5: 67126774 ~ 67145505 (-)
ENSDARG00000011989	crx	5: 36932718 ~ 36936443 (+)
ENSDARG00000052223	rcvrna	3: 50441444 ~ 50443607 (-)
ENSDARG00000104372	gnb1b	6: 53304977 ~ 53334259 (-)
ENSDARG00000044199	gnat1	6: 42918933 ~ 42930302 (+)
ENSDARG00000097008	opn1mw1	6: 41181869 ~ 41183823 (+)
ENSDARG00000012610	saga	2: 5480125 ~ 5505094 (-)
ENSDARG00000020602	grk7a	2: 16536453 ~ 16544343 (+)
ENSDARG00000058803	grk1a	1: 245076 ~ 258138 (+)
ENSDARG00000070448	grk4	1: 11902579 ~ 11973341 (-)
ENSDARG00000019902	rcvrn2	16: 13911692 ~ 13921589 (-)
ENSDARG00000042529	gnat2	8: 25225590 ~ 25247284 (-)
ENSDARG00000002193	rho	8: 54076195 ~ 54077740 (-)
ENSDARG00000090454	gnb1a	8: 53269657 ~ 53334650 (+)
ENSDARG00000005574	vsx2	17: 31652640 ~ 31659670 (-)
ENSDARG00000026926	rom1b	14: 45675306 ~ 45701004 (+)
ENSDARG00000055534	grk7b	18: 41740742 ~ 41754020 (-)
ENSDARG00000086756	NA	18: 5781194 ~ 5781922 (-)
ENSDARG00000059163	rbp3	12: 2665081 ~ 2670156 (+)
ENSDARG00000038018	prph2a	12: 34896956 ~ 34901874 (+)
ENSDARG00000103543	gngt2b	12: 3249054 ~ 3252263 (-)
ENSDARG00000002696	gnb3b	19: 5106226 ~ 5135345 (-)
ENSDARG00000035798	gngt1	19: 40856534 ~ 40859468 (+)
ENSDARG00000038378	sagb	15: 45640906 ~ 45663081 (+)
ENSDARG00000012125	cnga1b	23: 43849190 ~ 43866354 (+)
ENSDARG00000045989	arf4a	11: 42494531 ~ 42502940 (+)
ENSDARG00000002607	unm_sa1614	11: 26476153 ~ 26562346 (+)
ENSDARG00000017274	opn1sw2	11: 25459697 ~ 25475403 (+)
ENSDARG00000043542	zpr1	10: 29820172 ~ 29831944 (-)
ENSDARG00000056511	arr3a	10: 26800213 ~ 26811397 (+)
ENSDARG00000039729	asap1b	24: 10897768 ~ 11057305 (-)
ENSDARG00000045904	nr2e3	25: 22274642 ~ 22278655 (+)
--	si:ch211-103a14.5	--

MARKER

The figure above shows the marker information in datasets of Danio rerio.
: marker.
: potential marker.
Click the legend to hide the icon of the cell type, which can be used in the case of overlapping icons.

EXPRESSION

Dataset ID	Tissue / Organ	Experiment type	Sample	Cell type	Marker class	Evidence
GSE175929 (5mpf)	retina	baseline	5mpf, GFP-positive cells collected from two transgenic zebrafish, Tg(rho:EGFP)ja2Tg and Tg(gnat2:EGFP)ja23Tg	Rod opsin (cluster: 2) Rod opsin (cluster: 9) Rod opsin (cluster: 11)	marker marker marker	DOI:10.1038/s41598-021-96837-z DOI:10.1038/s41598-021-96837-z DOI:10.1038/s41598-021-96837-z
PRJNA672101 (nrl-KO)	retina	growth	5mpf, three retinas from nrl-KO zebrafsih	Rod (cluster: 5)	marker	DOI:10.1371/journal.pgen.1009841
PRJNA672101 (WT)	retina	baseline	5mpf, three retinas from WT zebrafsih	Rod (cluster: 2) Rod (cluster: 3)	marker marker	DOI:10.1371/journal.pgen.1009841 DOI:10.1371/journal.pgen.1009841
PRJNA564810 (5dpf)	embryo	baseline	5dpf, a single-cell transcriptome atlas for zebrafish development	Photoreceptor cells (cluster: 16)	potential marker	NA
GSE122680 (3dpf)	retina	baseline	3dpf, WT, untreatment
GSE158142 (5dpf)	brain, eye	baseline	5dpf, untreatment
GSE158142 (8dpf)	brain, eye	baseline	8dpf, untreatment
GSE168695 (5dpf)	embryo	baseline	5dpf, GFP+ cells isolated from 5 dpf cldnb:lyn-EGFP embryos
PRJNA564810 (2dpf)	embryo	baseline	2dpf, a single-cell transcriptome atlas for zebrafish development
PRJNA564810 (1dpf)	embryo	baseline	1dpf, a single-cell transcriptome atlas for zebrafish development
GSE158142 (1.5dpf)	head	baseline	1.5dpf, untreatment
GSE158142 (2dpf)	head	baseline	2dpf, untreatment
GSE158142 (3dpf)	head	baseline	3dpf, untreatment
GSE123241 (wild type)	neuromast	baseline	5dpf, wild type during sensory hair cell regeneration, lateral line sensory
PRJNA668529 (3d)	olfactory rosette	disease	3mpf, intranasal 100ng r-Spike 3 days
GSE122680 (14dpf)	retina	baseline	14dpf, WT, untreatment
GSE122680 (2dpf)	retina	baseline	2dpf, WT, untreatment
PRJNA551501 (2mpf)	thyroid gland	baseline	2mpf, Tg(tg:mVenus-T2A-NTR)
PRJNA551501 (8mpf)	thyroid gland	baseline	8mpf, Tg(tg:mVenus-T2A-NTR)
GSE176129 (pdgfrb-positive)	whole body	baseline	5dpf, FACS-isolated pdgfrb-positive cells
GSE158099 (WT)	whole body	baseline	16dpf, cd41:GFPlow-WT
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-

After clicking the magnifying glass button, the clustering and expression information will be displayed below.

species	Danio rerio
tissue	pituitary
cell type	Erythroid cells
gene	ENSDARG00000077809 il13
project	GSE158142
dataset	GSE158142 (20hpf)

GENE ID: ENSDARG00000002193

MARKER

EXPRESSION

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences