Fish Single-cell RNA Database

GENE ID: ENSDARG00000075459

Symbol	Location	Gene type	Genome version	Species
ptpn20	13: 31177934 ~ 31228552 (+)	protein_coding	GRCz11	Danio rerio

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000075459 (ptpn20), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

Gene ID	Symbol	Location
ENSDARG00000013860	ptpmt1	7: 38577869 ~ 38582618 (+)
ENSDARG00000007723	efnb1	5: 36271016 ~ 36328688 (-)
ENSDARG00000060235	mst1ra	6: 42475730 ~ 42505007 (+)
ENSDARG00000074781	ptprt	6: 51020918 ~ 51386696 (-)
ENSDARG00000097572	ptprt	6: 51009981 ~ 51101834 (-)
ENSDARG00000107511	lyn	2: 27611956 ~ 27651674 (-)
ENSDARG00000061459	si:dkey-253i9.4	1: 21135012 ~ 21204114 (-)
ENSDARG00000075505	si:ch211-132g1.7	1: 1941031 ~ 2000357 (+)
ENSDARG00000101081	ptprub	16: 34916162 ~ 35330001 (-)
ENSDARG00000098913	faslg	20: 15600167 ~ 15605010 (+)
ENSDARG00000040258	si:ch73-340m8.2	17: 5829851 ~ 5860222 (-)
ENSDARG00000043586	fas	17: 23619924 ~ 23631411 (-)
ENSDARG00000021255	arhgap22	13: 31108334 ~ 31139766 (+)
ENSDARG00000075459	ptpn20	13: 31177934 ~ 31228552 (+)
ENSDARG00000095378	gdf10a	13: 31285660 ~ 31289625 (+)
ENSDARG00000060168	fam160b1	13: 43610350 ~ 43637371 (-)
ENSDARG00000016704	pbld	13: 22839821 ~ 22843805 (-)
ENSDARG00000026359	pbld2	13: 22849796 ~ 22862133 (-)
ENSDARG00000032103	mapk6	18: 39170127 ~ 39288894 (-)
ENSDARG00000073891	gdf10b	12: 2631711 ~ 2645640 (+)
ENSDARG00000076434	NA	12: 2446837 ~ 2492470 (+)
ENSDARG00000045269	pts	12: 312448 ~ 314899 (-)
ENSDARG00000001559	csmd2	19: 36114846 ~ 36675023 (-)
ENSDARG00000100822	mapk15	19: 46240171 ~ 46257880 (+)
ENSDARG00000092638	ptprua	19: 16222618 ~ 16657563 (+)
ENSDARG00000040615	ilkap	15: 46722510 ~ 46736432 (-)
ENSDARG00000058647	hck	23: 7505943 ~ 7545960 (+)
ENSDARG00000076011	NA	23: 43809484 ~ 43831195 (+)
ENSDARG00000068973	pdlim4	21: 43738398 ~ 43801511 (-)
ENSDARG00000062402	frem1b	22: 17118225 ~ 17191525 (+)

EXPRESSION

Dataset ID	Tissue / Organ	Experiment type	Sample	Cell type	Marker class	Evidence
PRJNA415636 (brain)	brain	baseline	adult, Zebrabow M, brain	NA	NA	NA
PRJNA734348 (dome, dnmt1)	embryo	growth	4.3hpf, dome, oocyte microinjection with Rhodamine B and dnmt1 MO at oogenesis III stage (GV)	NA	NA	NA
PRJNA734348 (shield, control)	embryo	baseline	6hpf, shield, oocyte microinjection with Rhodamine B and control MO at oogenesis III stage (GV)	NA	NA	NA
GSE168695 (5dpf)	embryo	baseline	5dpf, GFP+ cells isolated from 5 dpf cldnb:lyn-EGFP embryos	NA	NA	NA
PRJNA706197 (18hpf)	embryo	baseline	18hpf, FACS sorted sox10:nEOS cells	NA	NA	NA
PRJNA564810 (5dpf)	embryo	baseline	5dpf, a single-cell transcriptome atlas for zebrafish development	NA	NA	NA
PRJNA564810 (2dpf)	embryo	baseline	2dpf, a single-cell transcriptome atlas for zebrafish development	NA	NA	NA
PRJNA564810 (1dpf)	embryo	baseline	1dpf, a single-cell transcriptome atlas for zebrafish development	NA	NA	NA
PRJNA415636 (pancreas, liver)	hepatopancreas	baseline	adult, Zebrabow M, pancreas and liver	NA	NA	NA
GSE150498 (wildtype, untreated)	intestine	baseline	6dpf, wildtype, untreated	NA	NA	NA
GSE150498 (nod2-\|-, untreated)	intestine	disease	6dpf, nod2-/-, untreated	NA	NA	NA
GSE150498 (wildtype, 1X DSS)	intestine	disease	6dpf, wildtype, 1X DSS	NA	NA	NA
GSE150498 (nod2-\|-, 1X DSS)	intestine	disease	6dpf, nod2-/-, 1X DSS	NA	NA	NA
GSE150498 (wildtype, 2X DSS+BZA)	intestine	disease	6dpf, wildtype, 2X DSS+BZA	NA	NA	NA
GSE150498 (nod2-\|-, 2X DSS)	intestine	disease	6dpf, nod2-/-, 2X DSS	NA	NA	NA
GSE150498 (nod2-\|-, 2X DSS+BZA)	intestine	disease	6dpf, nod2-/-, 2X DSS+BZA	NA	NA	NA
GSE123241 (wild type)	neuromast	baseline	5dpf, wild type during sensory hair cell regeneration, lateral line sensory	NA	NA	NA
PRJNA605021 (hair cells)	neuromast	baseline	7dpf, posterior lateral-line neuromast cells were isolated from the dissociated trunks of Tg[myo6b:actb1-EGFP] transgenic zebrafish larvae	NA	NA	NA
PRJNA668529 (3d)	olfactory rosette	disease	3mpf, intranasal 100ng r-Spike 3 days	NA	NA	NA
GSE148591 (6mpf)	pituitary	baseline	6mpf, male, Sox17:CreERT2	NA	NA	NA
GSE148591 (3mpf)	pituitary	transplant	3mpf, graft transplantation during early embryogenesis	NA	NA	NA
PRJNA415636 (primary pancreatic islet)	primary pancreatic islet	baseline	adult, Zebrabow M, primary pancreatic islet	NA	NA	NA
PRJNA672101 (nrl-KO)	retina	growth	5mpf, three retinas from nrl-KO zebrafsih	NA	NA	NA
PRJNA672101 (WT)	retina	baseline	5mpf, three retinas from WT zebrafsih	NA	NA	NA
GSE131136 (all)	trunk, skin	baseline	5dpf, sox10:CRE positive cells from 5dpf and post-embryonic zebrafish trunks with and without thyroid hormone	NA	NA	NA
GSE176129 (pdgfrb-positive)	whole body	baseline	5dpf, FACS-isolated pdgfrb-positive cells	NA	NA	NA
GSE158099 (runx1 -\|-)	whole body	hematopoietic	6dpf, cd41:GFPlow-runx1-/-	NA	NA	NA
GSE158099 (runx1 -\|-)	whole body	hematopoietic	10dpf, cd41:GFPlow-runx1-/-	NA	NA	NA
GSE158099 (WT)	whole body	baseline	16dpf, cd41:GFPlow-WT	NA	NA	NA
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-	NA	NA	NA
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-	NA	NA	NA

After clicking the magnifying glass button, the clustering and expression information will be displayed below.

species	Danio rerio
tissue	pituitary
cell type	Erythroid cells
gene	ENSDARG00000077809 il13
project	GSE158142
dataset	GSE158142 (20hpf)

GENE ID: ENSDARG00000075459

EXPRESSION

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences