Fish Single-cell RNA Database

GENE ID: ENSDARG00000061070

Symbol	Location	Gene type	Genome version	Species
chst3a	13: 29510023 ~ 29520852 (+)	protein_coding	GRCz11	Danio rerio

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000061070 (chst3a), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

Gene ID	Symbol	Location
ENSDARG00000012066	dcn	4: 16368762 ~ 16412084 (-)
ENSDARG00000034375	chst11	4: 9103182 ~ 9173552 (-)
ENSDARG00000028786	chst12a	3: 41726360 ~ 41732947 (+)
ENSDARG00000062008	hs2st1b	6: 26063962 ~ 26225814 (-)
ENSDARG00000044341	chst7	6: 37603968 ~ 37622576 (-)
ENSDARG00000038789	tmem53	2: 32846602 ~ 32850621 (+)
ENSDARG00000092242	NA	1: 11595798 ~ 11596829 (-)
ENSDARG00000092200	NA	1: 11606010 ~ 11607062 (-)
ENSDARG00000093636	NA	1: 11615273 ~ 11616295 (-)
ENSDARG00000095482	NA	1: 11626252 ~ 11631634 (-)
ENSDARG00000094981	chst12b	1: 11641482 ~ 11642513 (-)
ENSDARG00000077198	chst12b	1: 11736420 ~ 11737595 (+)
ENSDARG00000069981	cspg5a	16: 42319438 ~ 42390640 (-)
ENSDARG00000043011	chst14	20: 25739979 ~ 25748407 (-)
ENSDARG00000006044	usta	20: 31309364 ~ 31427390 (-)
ENSDARG00000089233	csgalnact1b	8: 635704 ~ 648289 (+)
ENSDARG00000074527	chst15	17: 21514777 ~ 21563774 (+)
ENSDARG00000061070	chst3a	13: 29510023 ~ 29520852 (+)
ENSDARG00000116042	chst3b	12: 49006048 ~ 49012695 (+)
ENSDARG00000002945	bgnb	23: 20014030 ~ 20051369 (-)
ENSDARG00000004018	NA	23: 34990693 ~ 35025117 (+)
ENSDARG00000040535	csgalnact1a	10: 8298984 ~ 8358396 (-)
ENSDARG00000005783	ncanb	22: 17864872 ~ 18116635 (-)
ENSDARG00000078227	cspg4	25: 6507141 ~ 6629281 (-)

MARKER

The figure above shows the marker information in datasets of Danio rerio.
: marker.
: potential marker.
Click the legend to hide the icon of the cell type, which can be used in the case of overlapping icons.

EXPRESSION

Dataset ID	Tissue / Organ	Experiment type	Sample	Cell type	Marker class	Evidence
GSE176129 (pdgfrb-positive)	whole body	baseline	5dpf, FACS-isolated pdgfrb-positive cells	Chondrocytes (cluster: 16)	potential marker	NA
GSE151354 (wild type)	cartilage	baseline	21dpf, wild type
GSE151354 (nkx3.2 mutant)	cartilage	growth	21dpf, nkx3.2 mutant
GSE130526 (fin)	dorsal and anal fin	baseline	adult, fins were amputated from fish expressing both pnp4a:palmmCherry and tyrp1b:palmmCherry
PRJNA656271 (2dpf)	embryo	baseline	2dpf, FACS-isolated EGFP+ cells
GSE126647 (control)	embryo	baseline	1.17dpf, control nkx2.5:ZsYellow+ cells
GSE106587 (WT)	embryo	baseline	12hpf, 6 somites, wild-type TLAB embryo
PRJNA564810 (2dpf)	embryo	baseline	2dpf, a single-cell transcriptome atlas for zebrafish development
GSE126647 (Pbx4-depleted)	embryo	growth	1.17dpf, Pbx4-depleted nkx2.5:ZsYellow+ cells
GSE106587 (MZoep mutant)	embryo	baseline	12hpf, 6 somites, maternal zygotic oep tz57 mutant embryo
PRJNA564810 (1dpf)	embryo	baseline	1dpf, a single-cell transcriptome atlas for zebrafish development
PRJNA706197 (18hpf)	embryo	baseline	18hpf, FACS sorted sox10:nEOS cells
PRJNA640816 (2dpf)	embryo	baseline	2dpf, FACS isolated -4.9sox10:EGFP+ cells
PRJNA656271 (24hpf)	embryo	baseline	24hpf, FACS-isolated EGFP+ cells
GSE173972 (HET, ezh1+\|-)	embryo	hematopoietic	1.25dpf, Kdrl-positive embryos
GSE158142 (20hpf)	head	baseline	20hpf, 21-22 somites, untreatment
GSE158142 (14hpf)	head	baseline	14hpf, 10 somites, untreatment
GSE158142 (3dpf)	head	baseline	3dpf, untreatment
GSE158142 (24hpf)	head	baseline	24hpf, untreatment
GSE158142 (16hpf)	head	baseline	16hpf, 14 somites, untreatment
GSE158142 (1.5dpf)	head	baseline	1.5dpf, untreatment
GSE158142 (18hpf)	head	baseline	18hpf, 18 somites, untreatment
GSE158142 (12hpf)	head	baseline	12hpf, 6 somites, untreatment
GSE158142 (2dpf)	head	baseline	2dpf, untreatment
PRJNA608912 (kit_7dpi)	heart	regeneration	5mpf, kit mutant, 7 days post injury
PRJNA608912 (kit_14dpi)	heart	regeneration	5mpf, kit mutant, 14 days post injury
PRJNA608912 (kit_2dpi)	heart	regeneration	5mpf, kit mutant, 2 days post injury
PRJNA415636 (heart, blood)	heart, blood	baseline	adult, Zebrabow M, heart and blood
GSE150498 (wildtype, 1X DSS)	intestine	disease	6dpf, wildtype, 1X DSS
GSE150498 (nod2-\|-, 2X DSS)	intestine	disease	6dpf, nod2-/-, 2X DSS
GSE150498 (untreated ctrl)	intestine	baseline	6dpf, untreated ctrl
GSE122680 (1.5dpf)	retina	baseline	1.5dpf, WT, untreatment
GSE122680 (14dpf)	retina	baseline	14dpf, WT, untreatment
GSE122680 (2dpf)	retina	baseline	2dpf, WT, untreatment
GSE122680 (24hpf)	retina	baseline	24hpf, WT, untreatment
GSE175929 (5mpf)	retina	baseline	5mpf, GFP-positive cells collected from two transgenic zebrafish, Tg(rho:EGFP)ja2Tg and Tg(gnat2:EGFP)ja23Tg
PRJNA551501 (8mpf)	thyroid gland	baseline	8mpf, Tg(tg:mVenus-T2A-NTR)
PRJNA551501 (2mpf)	thyroid gland	baseline	2mpf, Tg(tg:mVenus-T2A-NTR)
GSE152982 (wild type)	trunk	baseline	1.25dpf, untreatment
GSE163907 (24hpf)	trunk	baseline	24hpf, trunk tg(sox10:GFP) positive cells
GSE131136 (all)	trunk, skin	baseline	5dpf, sox10:CRE positive cells from 5dpf and post-embryonic zebrafish trunks with and without thyroid hormone
PRJNA641144 (C_INV)	tumor	disease	adult, ZMEL1-INV cells in vitro co-culture
PRJNA641144 (P_INV)	tumor	disease	adult, ZMEL1-INV cells in vivo primary tumors
GSE158099 (WT)	whole body	baseline	16dpf, cd41:GFPlow-WT
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-
GSE158099 (WT)	whole body	baseline	2.5dpf, cd41:GFPlow-WT
GSE158099 (runx1 -\|-)	whole body	hematopoietic	2.5dpf, cd41:GFPlow-runx1-/-

After clicking the magnifying glass button, the clustering and expression information will be displayed below.

GENE ID: ENSDARG00000061070

MARKER

EXPRESSION

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences