Fish Single-cell RNA Database

GENE ID: ENSDARG00000057887

Symbol	Location	Gene type	Genome version	Species
nts	18: 16330025 ~ 16339902 (+)	protein_coding	GRCz11	Danio rerio

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000057887 (nts), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

Gene ID	Symbol	Location
ENSDARG00000056145	si:dkey-159a18.1	4: 20110921 ~ 20118468 (-)
ENSDARG00000036045	penkb	7: 58686860 ~ 58696086 (+)
ENSDARG00000077167	nmbb	7: 30085149 ~ 30087048 (-)
ENSDARG00000056590	calca	7: 27680556 ~ 27696958 (-)
ENSDARG00000076978	pmchl	5: 54685175 ~ 54685710 (+)
ENSDARG00000042845	oxt	5: 72087619 ~ 72093253 (+)
ENSDARG00000070932	hcrt	3: 17537352 ~ 17541448 (+)
ENSDARG00000037794	nptx2a	3: 61566374 ~ 61593274 (-)
ENSDARG00000091616	prok2	6: 43918529 ~ 43922813 (-)
ENSDARG00000004869	penka	2: 11508691 ~ 11512819 (-)
ENSDARG00000001835	nalcn	9: 31589425 ~ 31747106 (-)
ENSDARG00000070810	ccka	16: 5774977 ~ 5779201 (+)
ENSDARG00000056252	sort1b	8: 25041713 ~ 25074319 (-)
ENSDARG00000006868	trh	8: 54220551 ~ 54223316 (-)
ENSDARG00000078247	vip	13: 46987955 ~ 46991577 (-)
ENSDARG00000057887	nts	18: 16330025 ~ 16339902 (+)
ENSDARG00000036222	npy	19: 20110699 ~ 20114149 (-)
ENSDARG00000014490	tac1	19: 25649626 ~ 25653185 (+)
ENSDARG00000040799	sst1.1	15: 36156986 ~ 36158851 (+)
ENSDARG00000087798	pdyn	23: 41799748 ~ 41802335 (+)
ENSDARG00000077577	ntsr1	23: 16430559 ~ 16525698 (+)
ENSDARG00000043074	grp	21: 10765886 ~ 10773344 (-)
ENSDARG00000079443	vipb	11: 43401201 ~ 43414172 (+)
ENSDARG00000029402	sort1a	11: 36280523 ~ 36341189 (-)
ENSDARG00000013776	thop1	11: 7183025 ~ 7212097 (+)
ENSDARG00000102900	tacr1b	10: 44769050 ~ 44788554 (-)
ENSDARG00000027657	crhb	24: 24847683 ~ 24881996 (-)
ENSDARG00000012013	cpa6	24: 18880254 ~ 18919649 (-)
ENSDARG00000022372	kng1	22: 36839080 ~ 36876133 (-)
ENSDARG00000091377	galn	25: 10556274 ~ 10565006 (-)

EXPRESSION

Dataset ID	Tissue / Organ	Experiment type	Sample	Cell type	Marker class	Evidence
PRJNA415636 (brain)	brain	baseline	adult, Zebrabow M, brain	NA	NA	NA
PRJNA554650 (6.5dpf)	brain	baseline	6.5dpf, whole brain of nr1d1:VNP fish	NA	NA	NA
GSE158142 (15dpf)	brain, eye	baseline	15dpf, untreatment	NA	NA	NA
GSE158142 (5dpf)	brain, eye	baseline	5dpf, untreatment	NA	NA	NA
GSE158142 (8dpf)	brain, eye	baseline	8dpf, untreatment	NA	NA	NA
PRJNA610520 (3.5dpf)	caudal hematopoietic tissue	baseline	3.5dpf, the mixture of same amount of kdrl:mCherry+ cells, CD41:GFP+ cells and double negative cells.	NA	NA	NA
PRJNA610520 (4.5dpf)	caudal hematopoietic tissue	baseline	4.5dpf, the mixture of same amount of kdrl:mCherry+ cells, CD41:GFP+ cells and double negative cells.	NA	NA	NA
PRJNA564810 (2dpf)	embryo	baseline	2dpf, a single-cell transcriptome atlas for zebrafish development	NA	NA	NA
PRJNA656271 (24hpf)	embryo	baseline	24hpf, FACS-isolated EGFP+ cells	NA	NA	NA
PRJNA640816 (2dpf)	embryo	baseline	2dpf, FACS isolated -4.9sox10:EGFP+ cells	NA	NA	NA
PRJNA564810 (1dpf)	embryo	baseline	1dpf, a single-cell transcriptome atlas for zebrafish development	NA	NA	NA
PRJNA640816 (2.9dpf)	embryo	baseline	2.9dpf, FACS isolated -4.9sox10:EGFP+ cells	NA	NA	NA
PRJNA564810 (5dpf)	embryo	baseline	5dpf, a single-cell transcriptome atlas for zebrafish development	NA	NA	NA
GSE168695 (5dpf)	embryo	baseline	5dpf, GFP+ cells isolated from 5 dpf cldnb:lyn-EGFP embryos	NA	NA	NA
GSE158142 (3dpf)	head	baseline	3dpf, untreatment	NA	NA	NA
GSE158142 (1.5dpf)	head	baseline	1.5dpf, untreatment	NA	NA	NA
PRJNA608912 (wt_14dpi)	heart	regeneration	5mpf, wild type, 14 days post injury	NA	NA	NA
PRJNA608912 (wt_unjuried)	heart	baseline	5mpf, wild type, uninjured	NA	NA	NA
PRJNA608912 (kit_14dpi)	heart	regeneration	5mpf, kit mutant, 14 days post injury	NA	NA	NA
PRJNA608912 (kit_uninjuried)	heart	regeneration	5mpf, kit mutant, uninjured	NA	NA	NA
PRJNA608912 (wt_2dpi)	heart	regeneration	5mpf, wild type, 2 days post injury	NA	NA	NA
PRJNA608912 (kit_2dpi)	heart	regeneration	5mpf, kit mutant, 2 days post injury	NA	NA	NA
PRJNA608912 (wt_7dpi)	heart	regeneration	5mpf, wild type, 7 days post injury	NA	NA	NA
PRJNA608912 (kit_7dpi)	heart	regeneration	5mpf, kit mutant, 7 days post injury	NA	NA	NA
PRJNA415636 (heart, blood)	heart, blood	baseline	adult, Zebrabow M, heart and blood	NA	NA	NA
PRJNA754013 (zebrafish)	hypothalamus	baseline	adult, male, female, untreatment	NA	NA	NA
GSE137784 (HCC, HepABC)	liver	disease	6mpf, male, isolated from the Tg(fabp10a:pt-B-cat)(HepABC) zebrafish with HCC	NA	NA	NA
PRJNA668529 (3d)	olfactory rosette	disease	3mpf, intranasal 100ng r-Spike 3 days	NA	NA	NA
PRJNA668529 (3h)	olfactory rosette	disease	3mpf, intranasal 100ng r-Spike 3 hours	NA	NA	NA
GSE148591 (3mpf)	pituitary	transplant	3mpf, graft transplantation during early embryogenesis	NA	NA	NA
PRJNA415636 (primary pancreatic islet)	primary pancreatic islet	baseline	adult, Zebrabow M, primary pancreatic islet	NA	NA	NA
PRJNA672101 (WT)	retina	baseline	5mpf, three retinas from WT zebrafsih	NA	NA	NA
PRJNA551501 (8mpf)	thyroid gland	baseline	8mpf, Tg(tg:mVenus-T2A-NTR)	NA	NA	NA
PRJNA551501 (2mpf)	thyroid gland	baseline	2mpf, Tg(tg:mVenus-T2A-NTR)	NA	NA	NA
GSE131136 (all)	trunk, skin	baseline	5dpf, sox10:CRE positive cells from 5dpf and post-embryonic zebrafish trunks with and without thyroid hormone	NA	NA	NA
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-	NA	NA	NA
GSE158099 (runx1 -\|-)	whole body	hematopoietic	2.5dpf, cd41:GFPlow-runx1-/-	NA	NA	NA
GSE158099 (WT)	whole body	baseline	16dpf, cd41:GFPlow-WT	NA	NA	NA
GSE176129 (pdgfrb-positive)	whole body	baseline	5dpf, FACS-isolated pdgfrb-positive cells	NA	NA	NA
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-	NA	NA	NA

After clicking the magnifying glass button, the clustering and expression information will be displayed below.

species	Danio rerio
tissue	pituitary
cell type	Erythroid cells
gene	ENSDARG00000077809 il13
project	GSE158142
dataset	GSE158142 (20hpf)

GENE ID: ENSDARG00000057887

EXPRESSION

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences