|
Dataset ID |
Tissue / Organ |
Experiment type |
Sample |
Cell type |
Marker class |
Evidence |
|
PRJNA554650 (6.5dpf) |
brain |
baseline |
6.5dpf, whole brain of nr1d1:VNP fish |
Purkinje cells (cluster: 19)
|
marker
|
DOI:10.1038/nbt.4103
|
|
GSE158142 (15dpf) |
brain, eye |
baseline |
15dpf, untreatment |
|
|
|
|
PRJNA415636 (brain) |
brain |
baseline |
adult, Zebrabow M, brain |
|
|
|
|
GSE158142 (5dpf) |
brain, eye |
baseline |
5dpf, untreatment |
|
|
|
|
GSE158142 (8dpf) |
brain, eye |
baseline |
8dpf, untreatment |
|
|
|
|
PRJNA640816 (2dpf) |
embryo |
baseline |
2dpf, FACS isolated -4.9sox10:EGFP+ cells |
|
|
|
|
PRJNA656271 (2dpf) |
embryo |
baseline |
2dpf, FACS-isolated EGFP+ cells |
|
|
|
|
GSE126647 (control) |
embryo |
baseline |
1.17dpf, control nkx2.5:ZsYellow+ cells |
|
|
|
|
GSE173972 (KO, ezh1-|-) |
embryo |
hematopoietic |
1.25dpf, Kdrl-positive embryos |
|
|
|
|
PRJNA564810 (5dpf) |
embryo |
baseline |
5dpf, a single-cell transcriptome atlas for zebrafish development |
|
|
|
|
GSE173972 (WT, ezh1+|+) |
embryo |
baseline |
1.25dpf, Kdrl-positive embryos |
|
|
|
|
PRJNA656271 (24hpf) |
embryo |
baseline |
24hpf, FACS-isolated EGFP+ cells |
|
|
|
|
PRJNA564810 (2dpf) |
embryo |
baseline |
2dpf, a single-cell transcriptome atlas for zebrafish development |
|
|
|
|
GSE173972 (HET, ezh1+|-) |
embryo |
hematopoietic |
1.25dpf, Kdrl-positive embryos |
|
|
|
|
GSE168695 (5dpf) |
embryo |
baseline |
5dpf, GFP+ cells isolated from 5 dpf cldnb:lyn-EGFP embryos |
|
|
|
|
PRJNA656271 (1.5dpf) |
embryo |
baseline |
1.5dpf, FACS-isolated EGFP+ cells |
|
|
|
|
GSE106587 (MZoep mutant) |
embryo |
baseline |
12hpf, 6 somites, maternal zygotic oep tz57 mutant embryo |
|
|
|
|
PRJNA564810 (1dpf) |
embryo |
baseline |
1dpf, a single-cell transcriptome atlas for zebrafish development |
|
|
|
|
GSE161712 (M. marinum) |
granulomas |
disease |
adult, infected with bacteria of M. marinum |
|
|
|
|
GSE158142 (1.5dpf) |
head |
baseline |
1.5dpf, untreatment |
|
|
|
|
GSE158142 (16hpf) |
head |
baseline |
16hpf, 14 somites, untreatment |
|
|
|
|
GSE158142 (2dpf) |
head |
baseline |
2dpf, untreatment |
|
|
|
|
GSE158142 (20hpf) |
head |
baseline |
20hpf, 21-22 somites, untreatment |
|
|
|
|
GSE158142 (12hpf) |
head |
baseline |
12hpf, 6 somites, untreatment |
|
|
|
|
GSE158142 (3dpf) |
head |
baseline |
3dpf, untreatment |
|
|
|
|
GSE158142 (24hpf) |
head |
baseline |
24hpf, untreatment |
|
|
|
|
GSE158142 (14hpf) |
head |
baseline |
14hpf, 10 somites, untreatment |
|
|
|
|
PRJNA754013 (zebrafish) |
hypothalamus |
baseline |
adult, male, female, untreatment |
|
|
|
|
GSE123241 (wild type) |
neuromast |
baseline |
5dpf, wild type during sensory hair cell regeneration, lateral line sensory |
|
|
|
|
PRJNA605021 (supporting cells) |
neuromast |
baseline |
7dpf, posterior lateral-line neuromast cells were isolated from the dissociated trunks of Tg[Et(krt4:EGFP)sqgw57A] transgenic zebrafish larvae |
|
|
|
|
GSE123241 (fgf3 mutants) |
neuromast |
regeneration |
5dpf, fgf3 mutants during sensory hair cell regeneration, lateral line sensory |
|
|
|
|
PRJNA605021 (hair cells) |
neuromast |
baseline |
7dpf, posterior lateral-line neuromast cells were isolated from the dissociated trunks of Tg[myo6b:actb1-EGFP] transgenic zebrafish larvae |
|
|
|
|
GSE123241 (fgf3 siblings) |
neuromast |
regeneration |
5dpf, fgf3 siblings during sensory hair cell regeneration, lateral line sensory |
|
|
|
|
PRJNA668529 (3d) |
olfactory rosette |
disease |
3mpf, intranasal 100ng r-Spike 3 days |
|
|
|
|
PRJNA668529 (3h) |
olfactory rosette |
disease |
3mpf, intranasal 100ng r-Spike 3 hours |
|
|
|
|
PRJNA668529 (control) |
olfactory rosette |
baseline |
3mpf, intranasal PBS |
|
|
|
|
GSE122680 (3dpf) |
retina |
baseline |
3dpf, WT, untreatment |
|
|
|
|
GSE122680 (14dpf) |
retina |
baseline |
14dpf, WT, untreatment |
|
|
|
|
GSE122680 (24hpf) |
retina |
baseline |
24hpf, WT, untreatment |
|
|
|
|
GSE122680 (2dpf) |
retina |
baseline |
2dpf, WT, untreatment |
|
|
|
|
GSE122680 (1.5dpf) |
retina |
baseline |
1.5dpf, WT, untreatment |
|
|
|
|
GSE175929 (5mpf) |
retina |
baseline |
5mpf, GFP-positive cells collected from two transgenic zebrafish, Tg(rho:EGFP)ja2Tg and Tg(gnat2:EGFP)ja23Tg |
|
|
|
|
PRJNA551501 (8mpf) |
thyroid gland |
baseline |
8mpf, Tg(tg:mVenus-T2A-NTR) |
|
|
|
|
GSE152982 (wild type) |
trunk |
baseline |
1.25dpf, untreatment |
|
|
|
|
GSE163907 (24hpf) |
trunk |
baseline |
24hpf, trunk tg(sox10:GFP) positive cells |
|
|
|
|
GSE131136 (all) |
trunk, skin |
baseline |
5dpf, sox10:CRE positive cells from 5dpf and post-embryonic zebrafish trunks with and without thyroid hormone |
|
|
|
|
GSE176129 (pdgfrb-positive) |
whole body |
baseline |
5dpf, FACS-isolated pdgfrb-positive cells |
|
|
|
|
GSE158099 (runx1 -|-) |
whole body |
hematopoietic |
16dpf, cd41:GFPlow-runx1-/- |
|
|
|
|
GSE158099 (runx1 -|-) |
whole body |
hematopoietic |
16dpf, cd41:GFPlow-runx1-/- |
|
|
|
|
GSE158099 (WT) |
whole body |
baseline |
16dpf, cd41:GFPlow-WT |
|
|
|