Fish Single-cell RNA Database

GENE ID: ENSDARG00000041107

Symbol	Location	Gene type	Genome version	Species
cftr	18: 20677090 ~ 20722810 (+)	protein_coding	GRCz11	Danio rerio

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000041107 (cftr), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

Gene ID	Symbol	Location
ENSDARG00000022424	slc26a5	4: 14932537 ~ 14954327 (-)
ENSDARG00000069431	slc26a4	4: 18782539 ~ 18796539 (+)
ENSDARG00000003615	slc26a3.2	4: 18804317 ~ 18823032 (+)
ENSDARG00000007371	slc26a3.1	4: 18824959 ~ 18835544 (+)
ENSDARG00000077506	tjp1a	7: 30930653 ~ 31142273 (+)
ENSDARG00000020008	vcp	5: 41510387 ~ 41520980 (+)
ENSDARG00000074231	CU138547.1	3: 13332870 ~ 13347096 (+)
ENSDARG00000054127	slc26a6l	6: 40723554 ~ 40732692 (+)
ENSDARG00000022261	pdzk1	9: 5862040 ~ 5892075 (+)
ENSDARG00000021905	derl1	16: 25643445 ~ 25663846 (-)
ENSDARG00000008678	snx3	20: 32406011 ~ 32432871 (+)
ENSDARG00000023117	gopc	20: 42246948 ~ 42281434 (+)
ENSDARG00000025091	ezrb	20: 13564931 ~ 13625588 (-)
ENSDARG00000097292	slc26a6	8: 26253252 ~ 26267110 (+)
ENSDARG00000055835	slc26a6	8: 26268100 ~ 26288506 (+)
ENSDARG00000008384	hdac6	8: 7393435 ~ 7444390 (-)
ENSDARG00000020944	ezra	17: 45413324 ~ 45452116 (+)
ENSDARG00000088124	adrb2a	14: 34825465 ~ 34830615 (-)
ENSDARG00000011618	slc26a2	14: 25438015 ~ 25452503 (-)
ENSDARG00000018989	hspa4b	14: 23687678 ~ 23708159 (+)
ENSDARG00000037488	canx	14: 16432738 ~ 16476863 (-)
ENSDARG00000041107	cftr	18: 20677090 ~ 20722810 (+)
ENSDARG00000007490	adrb1	12: 30442230 ~ 30443562 (-)
ENSDARG00000000068	slc9a3r1a	12: 33484458 ~ 33537126 (+)
ENSDARG00000075606	NA	19: 935565 ~ 943141 (+)
ENSDARG00000000588	grasp	23: 32199588 ~ 32236122 (-)
ENSDARG00000058738	si:ch211-117c9.2	23: 6882410 ~ 6920107 (-)
ENSDARG00000054510	adrb2b	21: 35078766 ~ 35082715 (-)
ENSDARG00000045228	stub1	24: 39656834 ~ 39667465 (+)
ENSDARG00000079374	tjp1b	25: 32031536 ~ 32271394 (+)
ENSDARG00000051876	ush1c	25: 22643954 ~ 22704233 (+)
ENSDARG00000102503	slc9a3r1b	KN149968.1: 15950 ~ 66894 (+)

MARKER

The figure above shows the marker information in datasets of Danio rerio.
: marker.
: potential marker.
Click the legend to hide the icon of the cell type, which can be used in the case of overlapping icons.

EXPRESSION

Dataset ID	Tissue / Organ	Experiment type	Sample	Cell type	Marker class	Evidence
PRJNA415636 (primary pancreatic islet)	primary pancreatic islet	baseline	adult, Zebrabow M, primary pancreatic islet	Pancreas duct epithelial cells (cluster: 14)	potential marker	NA
GSE158142 (5dpf)	brain, eye	baseline	5dpf, untreatment
PRJNA610520 (4.5dpf)	caudal hematopoietic tissue	baseline	4.5dpf, the mixture of same amount of kdrl:mCherry+ cells, CD41:GFP+ cells and double negative cells.
GSE144944 (fgfr3 -\|-)	cranial vault	growth	1mpf, fgfr3 -/-
GSE144944 (fgfr3 +\|+)	cranial vault	baseline	1mpf, fgfr3 +/+
PRJNA564810 (5dpf)	embryo	baseline	5dpf, a single-cell transcriptome atlas for zebrafish development
PRJNA706197 (18hpf)	embryo	baseline	18hpf, FACS sorted sox10:nEOS cells
PRJNA640816 (2dpf)	embryo	baseline	2dpf, FACS isolated -4.9sox10:EGFP+ cells
PRJNA564810 (2dpf)	embryo	baseline	2dpf, a single-cell transcriptome atlas for zebrafish development
PRJNA656271 (2dpf)	embryo	baseline	2dpf, FACS-isolated EGFP+ cells
GSE126647 (Pbx4-depleted)	embryo	growth	1.17dpf, Pbx4-depleted nkx2.5:ZsYellow+ cells
PRJNA564810 (1dpf)	embryo	baseline	1dpf, a single-cell transcriptome atlas for zebrafish development
GSE161712 (M. marinum)	granulomas	disease	adult, infected with bacteria of M. marinum
GSE158142 (24hpf)	head	baseline	24hpf, untreatment
GSE158142 (16hpf)	head	baseline	16hpf, 14 somites, untreatment
GSE158142 (1.5dpf)	head	baseline	1.5dpf, untreatment
GSE158142 (18hpf)	head	baseline	18hpf, 18 somites, untreatment
GSE158142 (20hpf)	head	baseline	20hpf, 21-22 somites, untreatment
PRJNA415636 (pancreas, liver)	hepatopancreas	baseline	adult, Zebrabow M, pancreas and liver
GSE150498 (nod2-\|-, 2X DSS+BZA)	intestine	disease	6dpf, nod2-/-, 2X DSS+BZA
GSE150498 (wildtype, 2X DSS)	intestine	disease	6dpf, wildtype, 2X DSS
GSE150498 (nod2-\|-, untreated)	intestine	disease	6dpf, nod2-/-, untreated
GSE150498 (untreated ctrl)	intestine	baseline	6dpf, untreated ctrl
GSE150498 (wildtype, 2X DSS+BZA)	intestine	disease	6dpf, wildtype, 2X DSS+BZA
GSE150498 (wildtype, 1X DSS)	intestine	disease	6dpf, wildtype, 1X DSS
GSE150498 (DSS treated)	intestine	disease	6dpf, DSS treated
GSE150498 (nod2-\|-, 2X DSS)	intestine	disease	6dpf, nod2-/-, 2X DSS
GSE150498 (nod2-\|-, 1X DSS)	intestine	disease	6dpf, nod2-/-, 1X DSS
GSE150498 (wildtype, untreated)	intestine	baseline	6dpf, wildtype, untreated
PRJNA668529 (3d)	olfactory rosette	disease	3mpf, intranasal 100ng r-Spike 3 days
PRJNA668529 (3h)	olfactory rosette	disease	3mpf, intranasal 100ng r-Spike 3 hours
GSE148591 (6mpf)	pituitary	baseline	6mpf, male, Sox17:CreERT2
GSE148591 (3mpf)	pituitary	transplant	3mpf, graft transplantation during early embryogenesis
PRJNA672101 (nrl-KO)	retina	growth	5mpf, three retinas from nrl-KO zebrafsih
GSE122680 (24hpf)	retina	baseline	24hpf, WT, untreatment
GSE175929 (5mpf)	retina	baseline	5mpf, GFP-positive cells collected from two transgenic zebrafish, Tg(rho:EGFP)ja2Tg and Tg(gnat2:EGFP)ja23Tg
GSE122680 (1.5dpf)	retina	baseline	1.5dpf, WT, untreatment
PRJNA672101 (WT)	retina	baseline	5mpf, three retinas from WT zebrafsih
PRJNA551501 (2mpf)	thyroid gland	baseline	2mpf, Tg(tg:mVenus-T2A-NTR)
PRJNA551501 (8mpf)	thyroid gland	baseline	8mpf, Tg(tg:mVenus-T2A-NTR)
GSE152982 (wild type)	trunk	baseline	1.25dpf, untreatment
GSE163907 (24hpf)	trunk	baseline	24hpf, trunk tg(sox10:GFP) positive cells
GSE131136 (all)	trunk, skin	baseline	5dpf, sox10:CRE positive cells from 5dpf and post-embryonic zebrafish trunks with and without thyroid hormone
GSE158099 (WT)	whole body	baseline	16dpf, cd41:GFPlow-WT
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-
GSE176129 (pdgfrb-positive)	whole body	baseline	5dpf, FACS-isolated pdgfrb-positive cells
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-

After clicking the magnifying glass button, the clustering and expression information will be displayed below.

GENE ID: ENSDARG00000041107

MARKER

EXPRESSION

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences