Fish Single-cell RNA Database

GENE ID: ENSDARG00000043814

Symbol	Location	Gene type	Genome version	Species
st6galnac1.1	12: 20678187 ~ 20685624 (+)	protein_coding	GRCz11	Danio rerio

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000043814 (st6galnac1.1), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

Gene ID	Symbol	Location
ENSDARG00000095324	galnt8b.2	4: 5215950 ~ 5223170 (+)
ENSDARG00000045851	galnt8b.1	4: 5205265 ~ 5213425 (+)
ENSDARG00000059438	galnt18b	7: 66259046 ~ 66452827 (-)
ENSDARG00000006832	galnt9	5: 16797209 ~ 16996482 (-)
ENSDARG00000055561	c1galt1b	6: 39190402 ~ 39199070 (-)
ENSDARG00000040048	NA	1: 37752171 ~ 38132612 (+)
ENSDARG00000057303	galnt7	1: 38142354 ~ 38170906 (+)
ENSDARG00000099227	galnt13	9: 4538527 ~ 4606463 (-)
ENSDARG00000061335	galnt1	16: 26863414 ~ 27100475 (+)
ENSDARG00000023448	galnt14	20: 38031439 ~ 38119890 (+)
ENSDARG00000053133	b3gnt7l	8: 22289320 ~ 22290886 (+)
ENSDARG00000053190	galnt16	17: 50127648 ~ 50186571 (+)
ENSDARG00000036335	c1galt1c1	14: 33515515 ~ 33521071 (-)
ENSDARG00000112898	st3gal2	18: 18612388 ~ 18631082 (+)
ENSDARG00000043814	st6galnac1.1	12: 20678187 ~ 20685624 (+)
ENSDARG00000043816	st6galnac1.2	12: 20691310 ~ 20700872 (+)
ENSDARG00000012745	poc1bl	19: 34169055 ~ 34218156 (+)
ENSDARG00000055490	galnt12	19: 34230108 ~ 34259666 (+)
ENSDARG00000099289	st3gal1l3	19: 18657029 ~ 18682510 (-)
ENSDARG00000062278	si:dkey-202e17.1	19: 25512797 ~ 25519612 (-)
ENSDARG00000042418	galnt17	15: 16521785 ~ 16546472 (+)
ENSDARG00000055585	c1galt1a	23: 28092083 ~ 28136739 (+)
ENSDARG00000014386	galnt6	23: 26763338 ~ 26784771 (-)
ENSDARG00000007494	st3gal8	11: 26568492 ~ 26590429 (-)
ENSDARG00000063636	galnt11	24: 7554582 ~ 7587401 (-)
ENSDARG00000100889	galnt18a	25: 17689565 ~ 17825514 (+)
ENSDARG00000012355	galnt8a.1	25: 16708584 ~ 16742636 (-)
ENSDARG00000011869	galnt8a.2	25: 16706101 ~ 16724913 (-)
--	galnt3	--

MARKER

The figure above shows the marker information in datasets of Danio rerio.
: marker.
: potential marker.
Click the legend to hide the icon of the cell type, which can be used in the case of overlapping icons.

EXPRESSION

Dataset ID	Tissue / Organ	Experiment type	Sample	Cell type	Marker class	Evidence
GSE168695 (5dpf)	embryo	baseline	5dpf, GFP+ cells isolated from 5 dpf cldnb:lyn-EGFP embryos	Ionocyte progenitors (cluster: 8)	potential marker	NA
PRJNA564810 (1dpf)	embryo	baseline	1dpf, a single-cell transcriptome atlas for zebrafish development	Mucous secreting cells (cluster: 24)	potential marker	NA
GSE150498 (nod2-\|-, 2X DSS)	intestine	disease	6dpf, nod2-/-, 2X DSS	Enteroendocrine + ILC3 (cluster: 10)	potential marker	NA
GSE144944 (fgfr3 +\|+)	cranial vault	baseline	1mpf, fgfr3 +/+
GSE144944 (fgfr3 -\|-)	cranial vault	growth	1mpf, fgfr3 -/-
PRJNA564810 (5dpf)	embryo	baseline	5dpf, a single-cell transcriptome atlas for zebrafish development
PRJNA564810 (2dpf)	embryo	baseline	2dpf, a single-cell transcriptome atlas for zebrafish development
GSE161712 (M. marinum)	granulomas	disease	adult, infected with bacteria of M. marinum
GSE158142 (1.5dpf)	head	baseline	1.5dpf, untreatment
GSE158142 (3dpf)	head	baseline	3dpf, untreatment
PRJNA415636 (pancreas, liver)	hepatopancreas	baseline	adult, Zebrabow M, pancreas and liver
GSE150498 (untreated ctrl)	intestine	baseline	6dpf, untreated ctrl
GSE150498 (DSS treated)	intestine	disease	6dpf, DSS treated
GSE150498 (wildtype, untreated)	intestine	baseline	6dpf, wildtype, untreated
GSE150498 (nod2-\|-, untreated)	intestine	disease	6dpf, nod2-/-, untreated
GSE150498 (wildtype, 1X DSS)	intestine	disease	6dpf, wildtype, 1X DSS
GSE150498 (nod2-\|-, 1X DSS)	intestine	disease	6dpf, nod2-/-, 1X DSS
GSE150498 (wildtype, 2X DSS)	intestine	disease	6dpf, wildtype, 2X DSS
GSE150498 (wildtype, 2X DSS+BZA)	intestine	disease	6dpf, wildtype, 2X DSS+BZA
GSE150498 (nod2-\|-, 2X DSS+BZA)	intestine	disease	6dpf, nod2-/-, 2X DSS+BZA
PRJNA605021 (supporting cells)	neuromast	baseline	7dpf, posterior lateral-line neuromast cells were isolated from the dissociated trunks of Tg[Et(krt4:EGFP)sqgw57A] transgenic zebrafish larvae
PRJNA668529 (3d)	olfactory rosette	disease	3mpf, intranasal 100ng r-Spike 3 days
PRJNA668529 (3h)	olfactory rosette	disease	3mpf, intranasal 100ng r-Spike 3 hours
PRJNA668529 (control)	olfactory rosette	baseline	3mpf, intranasal PBS
PRJNA415636 (primary pancreatic islet)	primary pancreatic islet	baseline	adult, Zebrabow M, primary pancreatic islet
PRJNA551501 (2mpf)	thyroid gland	baseline	2mpf, Tg(tg:mVenus-T2A-NTR)
GSE152982 (wild type)	trunk	baseline	1.25dpf, untreatment
GSE131136 (all)	trunk, skin	baseline	5dpf, sox10:CRE positive cells from 5dpf and post-embryonic zebrafish trunks with and without thyroid hormone
PRJNA641144 (C_PRO)	tumor	disease	adult, ZMEL1-PRO cells in vitro co-culture
GSE176129 (pdgfrb-positive)	whole body	baseline	5dpf, FACS-isolated pdgfrb-positive cells
GSE158099 (WT)	whole body	baseline	6dpf, cd41:GFPlow-WT
GSE158099 (WT)	whole body	baseline	16dpf, cd41:GFPlow-WT
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-

After clicking the magnifying glass button, the clustering and expression information will be displayed below.

species	Danio rerio
tissue	pituitary
cell type	Erythroid cells
gene	ENSDARG00000077809 il13
project	GSE158142
dataset	GSE158142 (20hpf)

GENE ID: ENSDARG00000043814

MARKER

EXPRESSION

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences