Fish Single-cell RNA Database

GENE ID: ENSDARG00000056045

Symbol	Location	Gene type	Genome version	Species
si:ch73-139e5.4	12: 19065679 ~ 19091214 (-)	protein_coding	GRCz11	Danio rerio

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000056045 (si:ch73-139e5.4), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

Gene ID	Symbol	Location
ENSDARG00000010454	guca1a	4: 22343093 ~ 22350976 (+)
ENSDARG00000051915	pde5ab	7: 57539146 ~ 57619470 (+)
ENSDARG00000009466	rgs9bp	7: 41303572 ~ 41312197 (+)
ENSDARG00000054741	prkg2	5: 39679767 ~ 39702345 (-)
ENSDARG00000055656	pdzd3b	5: 30680804 ~ 30697908 (+)
ENSDARG00000052223	rcvrna	3: 50441444 ~ 50443607 (-)
ENSDARG00000056806	pde5aa	1: 14257158 ~ 14258409 (-)
ENSDARG00000075929	si:dkey-219c10.4	9: 38140911 ~ 38156894 (-)
ENSDARG00000063732	pde11a	9: 1505206 ~ 1574386 (+)
ENSDARG00000060280	pde9a	9: 19421841 ~ 19477248 (+)
ENSDARG00000060875	pde1a	9: 44498182 ~ 44642108 (-)
ENSDARG00000006151	pde11al	16: 21144669 ~ 21185778 (-)
ENSDARG00000019902	rcvrn2	16: 13911692 ~ 13921589 (-)
ENSDARG00000069026	adcy1a	20: 6894886 ~ 7000225 (-)
ENSDARG00000000380	pde6a	14: 25005403 ~ 25035010 (-)
ENSDARG00000003449	pde10a	13: 4505079 ~ 4620715 (+)
ENSDARG00000068242	cngb1a	18: 45483282 ~ 45519748 (+)
ENSDARG00000100397	pde6c	12: 5129245 ~ 5154099 (+)
ENSDARG00000056045	si:ch73-139e5.4	12: 19065679 ~ 19091214 (-)
ENSDARG00000007655	crybb1l3	15: 28096152 ~ 28104403 (+)
ENSDARG00000040568	pdzd3a	15: 23452862 ~ 23467750 (-)
ENSDARG00000076650	pde9al	15: 22333778 ~ 22348626 (+)
ENSDARG00000079064	CABZ01079080.1	15: 47100392 ~ 47107557 (-)
ENSDARG00000030758	guca1c	15: 2884711 ~ 2903475 (-)
ENSDARG00000011671	pde6b	21: 20356458 ~ 20376607 (+)
--	pde6g	--
--	si:ch211-103a14.5	--

EXPRESSION

Dataset ID	Tissue / Organ	Experiment type	Sample	Cell type	Marker class	Evidence
GSE168695 (5dpf)	embryo	baseline	5dpf, GFP+ cells isolated from 5 dpf cldnb:lyn-EGFP embryos	NA	NA	NA
PRJNA564810 (5dpf)	embryo	baseline	5dpf, a single-cell transcriptome atlas for zebrafish development	NA	NA	NA
PRJNA564810 (2dpf)	embryo	baseline	2dpf, a single-cell transcriptome atlas for zebrafish development	NA	NA	NA
PRJNA564810 (1dpf)	embryo	baseline	1dpf, a single-cell transcriptome atlas for zebrafish development	NA	NA	NA
GSE150498 (wildtype, untreated)	intestine	baseline	6dpf, wildtype, untreated	NA	NA	NA
GSE150498 (nod2-\|-, untreated)	intestine	disease	6dpf, nod2-/-, untreated	NA	NA	NA
GSE150498 (wildtype, 1X DSS)	intestine	disease	6dpf, wildtype, 1X DSS	NA	NA	NA
GSE150498 (nod2-\|-, 1X DSS)	intestine	disease	6dpf, nod2-/-, 1X DSS	NA	NA	NA
GSE150498 (wildtype, 2X DSS)	intestine	disease	6dpf, wildtype, 2X DSS	NA	NA	NA
GSE150498 (wildtype, 2X DSS+BZA)	intestine	disease	6dpf, wildtype, 2X DSS+BZA	NA	NA	NA
GSE150498 (nod2-\|-, 2X DSS)	intestine	disease	6dpf, nod2-/-, 2X DSS	NA	NA	NA
GSE150498 (nod2-\|-, 2X DSS+BZA)	intestine	disease	6dpf, nod2-/-, 2X DSS+BZA	NA	NA	NA
PRJNA668529 (3d)	olfactory rosette	disease	3mpf, intranasal 100ng r-Spike 3 days	NA	NA	NA
PRJNA668529 (control)	olfactory rosette	baseline	3mpf, intranasal PBS	NA	NA	NA
PRJNA415636 (primary pancreatic islet)	primary pancreatic islet	baseline	adult, Zebrabow M, primary pancreatic islet	NA	NA	NA
GSE122680 (3dpf)	retina	baseline	3dpf, WT, untreatment	NA	NA	NA
GSE122680 (14dpf)	retina	baseline	14dpf, WT, untreatment	NA	NA	NA
GSE122680 (2dpf)	retina	baseline	2dpf, WT, untreatment	NA	NA	NA
GSE131136 (all)	trunk, skin	baseline	5dpf, sox10:CRE positive cells from 5dpf and post-embryonic zebrafish trunks with and without thyroid hormone	NA	NA	NA
GSE176129 (pdgfrb-positive)	whole body	baseline	5dpf, FACS-isolated pdgfrb-positive cells	NA	NA	NA
GSE158099 (WT)	whole body	baseline	10dpf, cd41:GFPlow-WT	NA	NA	NA
GSE158099 (runx1 -\|-)	whole body	hematopoietic	10dpf, cd41:GFPlow-runx1-/-	NA	NA	NA
GSE158099 (WT)	whole body	baseline	16dpf, cd41:GFPlow-WT	NA	NA	NA
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-	NA	NA	NA
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-	NA	NA	NA

After clicking the magnifying glass button, the clustering and expression information will be displayed below.

species	Danio rerio
tissue	pituitary
cell type	Erythroid cells
gene	ENSDARG00000077809 il13
project	GSE158142
dataset	GSE158142 (20hpf)

GENE ID: ENSDARG00000056045

EXPRESSION

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences