Fish Single-cell RNA Database

GENE ID: ENSDARG00000092498

Symbol	Location	Gene type	Genome version	Species
si:dkeyp-46h3.2	19: 27586823 ~ 27588842 (-)	protein_coding	GRCz11	Danio rerio

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Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000092498 (si:dkeyp-46h3.2), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

Gene ID	Symbol	Location
ENSDARG00000079034	zpax4	7: 20577694 ~ 20582921 (-)
ENSDARG00000074764	zgc:171426	3: 3469600 ~ 3481763 (+)
ENSDARG00000038720	zp3f.1	2: 38282647 ~ 38284749 (-)
ENSDARG00000038271	zgc:113293	2: 205763 ~ 211064 (+)
ENSDARG00000092090	si:ch211-125e6.12	9: 33216945 ~ 33218269 (+)
ENSDARG00000034989	retsatl	9: 44994214 ~ 44998722 (+)
ENSDARG00000042129	zp3a.1	20: 33991801 ~ 33993698 (+)
ENSDARG00000069251	zpax1	20: 43737022 ~ 43743700 (-)
ENSDARG00000089966	si:zfos-1505d6.3	20: 54299419 ~ 54301276 (+)
ENSDARG00000069411	cx34.5	20: 40757141 ~ 40760217 (-)
ENSDARG00000095867	si:ch73-132k15.2	8: 50134007 ~ 50135528 (-)
ENSDARG00000114958	zp3	17: 2580541 ~ 2584423 (-)
ENSDARG00000115457	zp3.2	17: 2587132 ~ 2590222 (-)
ENSDARG00000092498	si:dkeyp-46h3.2	19: 27586823 ~ 27588842 (-)
ENSDARG00000077741	zgc:175135	11: 18037729 ~ 18039583 (+)
ENSDARG00000070709	wu:fi42e03	11: 29537756 ~ 29540033 (+)
ENSDARG00000076949	zgc:173837	10: 19595009 ~ 19598009 (+)
ENSDARG00000092924	zgc:171474	24: 10010630 ~ 10014624 (-)
ENSDARG00000045424	zgc:173856	24: 10018653 ~ 10021341 (-)
ENSDARG00000086221	si:ch211-226h8.4	22: 25184459 ~ 25185570 (+)
ENSDARG00000089869	zgc:172218	22: 25236657 ~ 25237839 (+)
ENSDARG00000088923	si:ch211-12h2.8	22: 25611415 ~ 25612680 (-)
ENSDARG00000089525	si:dkeyp-98a7.5	22: 25693295 ~ 25711403 (+)
ENSDARG00000094674	si:dkeyp-98a7.8	22: 25720725 ~ 25721994 (+)
ENSDARG00000087584	si:dkeyp-98a7.9	22: 25733817 ~ 25744301 (+)

EXPRESSION

Dataset ID	Tissue / Organ	Experiment type	Sample	Cell type	Marker class	Evidence
PRJNA610520 (3.5dpf)	caudal hematopoietic tissue	baseline	3.5dpf, the mixture of same amount of kdrl:mCherry+ cells, CD41:GFP+ cells and double negative cells.	NA	NA	NA
PRJNA564810 (1dpf)	embryo	baseline	1dpf, a single-cell transcriptome atlas for zebrafish development	NA	NA	NA
PRJNA706197 (14hpf)	embryo	baseline	14hpf, FACS sorted sox10:nEOS cells	NA	NA	NA
PRJNA640816 (2.9dpf)	embryo	baseline	2.9dpf, FACS isolated -4.9sox10:EGFP+ cells	NA	NA	NA
GSE173972 (KO, ezh1-\|-)	embryo	hematopoietic	1.25dpf, Kdrl-positive embryos	NA	NA	NA
GSE106587 (MZoep mutant)	embryo	baseline	12hpf, 6 somites, maternal zygotic oep tz57 mutant embryo	NA	NA	NA
PRJNA734348 (shield, control)	embryo	baseline	6hpf, shield, oocyte microinjection with Rhodamine B and control MO at oogenesis III stage (GV)	NA	NA	NA
GSE158849 (labeled)	embryo	baseline	6hpf, WT, 4sUTP injected (labeled)	NA	NA	NA
GSE126647 (Pbx4-depleted)	embryo	growth	1.17dpf, Pbx4-depleted nkx2.5:ZsYellow+ cells	NA	NA	NA
PRJNA706197 (18hpf)	embryo	baseline	18hpf, FACS sorted sox10:nEOS cells	NA	NA	NA
GSE173972 (WT, ezh1+\|+)	embryo	baseline	1.25dpf, Kdrl-positive embryos	NA	NA	NA
PRJNA734348 (shield, dnmt1)	embryo	growth	6hpf, shield, oocyte microinjection with Rhodamine B and dnmt1 MO at oogenesis III stage (GV)	NA	NA	NA
GSE158849 (unlabeled)	embryo	baseline	6hpf, WT, 4sUTP injected (unlabeled)	NA	NA	NA
PRJNA734348 (dome, control)	embryo	baseline	4.3hpf, dome, oocyte microinjection with Rhodamine B and control MO at oogenesis III stage (GV)	NA	NA	NA
PRJNA706197 (12hpf)	embryo	baseline	12hpf, FACS sorted sox10:nEOS cells	NA	NA	NA
PRJNA564810 (2dpf)	embryo	baseline	2dpf, a single-cell transcriptome atlas for zebrafish development	NA	NA	NA
GSE173972 (HET, ezh1+\|-)	embryo	hematopoietic	1.25dpf, Kdrl-positive embryos	NA	NA	NA
GSE106587 (WT)	embryo	baseline	12hpf, 6 somites, wild-type TLAB embryo	NA	NA	NA
PRJNA734348 (dome, dnmt1)	embryo	growth	4.3hpf, dome, oocyte microinjection with Rhodamine B and dnmt1 MO at oogenesis III stage (GV)	NA	NA	NA
GSE126647 (control)	embryo	baseline	1.17dpf, control nkx2.5:ZsYellow+ cells	NA	NA	NA
GSE158142 (24hpf)	head	baseline	24hpf, untreatment	NA	NA	NA
GSE158142 (16hpf)	head	baseline	16hpf, 14 somites, untreatment	NA	NA	NA
GSE158142 (18hpf)	head	baseline	18hpf, 18 somites, untreatment	NA	NA	NA
GSE158142 (12hpf)	head	baseline	12hpf, 6 somites, untreatment	NA	NA	NA
GSE158142 (20hpf)	head	baseline	20hpf, 21-22 somites, untreatment	NA	NA	NA
GSE158142 (14hpf)	head	baseline	14hpf, 10 somites, untreatment	NA	NA	NA
GSE150498 (wildtype, 2X DSS+BZA)	intestine	disease	6dpf, wildtype, 2X DSS+BZA	NA	NA	NA
GSE150498 (wildtype, 1X DSS)	intestine	disease	6dpf, wildtype, 1X DSS	NA	NA	NA
GSE150498 (DSS treated)	intestine	disease	6dpf, DSS treated	NA	NA	NA
GSE150498 (nod2-\|-, 2X DSS)	intestine	disease	6dpf, nod2-/-, 2X DSS	NA	NA	NA
GSE150498 (nod2-\|-, 1X DSS)	intestine	disease	6dpf, nod2-/-, 1X DSS	NA	NA	NA
GSE150498 (wildtype, untreated)	intestine	baseline	6dpf, wildtype, untreated	NA	NA	NA
GSE150498 (nod2-\|-, 2X DSS+BZA)	intestine	disease	6dpf, nod2-/-, 2X DSS+BZA	NA	NA	NA
GSE150498 (wildtype, 2X DSS)	intestine	disease	6dpf, wildtype, 2X DSS	NA	NA	NA
GSE150498 (nod2-\|-, untreated)	intestine	disease	6dpf, nod2-/-, untreated	NA	NA	NA
GSE150498 (untreated ctrl)	intestine	baseline	6dpf, untreated ctrl	NA	NA	NA
GSE122680 (24hpf)	retina	baseline	24hpf, WT, untreatment	NA	NA	NA
PRJNA551501 (2mpf)	thyroid gland	baseline	2mpf, Tg(tg:mVenus-T2A-NTR)	NA	NA	NA
GSE152982 (wild type)	trunk	baseline	1.25dpf, untreatment	NA	NA	NA
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-	NA	NA	NA
GSE158099 (WT)	whole body	baseline	2.5dpf, cd41:GFPlow-WT	NA	NA	NA
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-	NA	NA	NA
GSE158099 (WT)	whole body	baseline	10dpf, cd41:GFPlow-WT	NA	NA	NA
GSE158099 (WT)	whole body	baseline	16dpf, cd41:GFPlow-WT	NA	NA	NA

After clicking the magnifying glass button, the clustering and expression information will be displayed below.

species	Danio rerio
tissue	pituitary
cell type	Erythroid cells
gene	ENSDARG00000077809 il13
project	GSE158142
dataset	GSE158142 (20hpf)

GENE ID: ENSDARG00000092498

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EXPRESSION

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences