Fish Single-cell RNA Database

GENE ID: ENSDARG00000055388

Symbol	Location	Gene type	Genome version	Species
vtna	15: 28202170 ~ 28208926 (+)	protein_coding	GRCz11	Danio rerio

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000055388 (vtna), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

Gene ID	Symbol	Location
ENSDARG00000056795	serpine1	7: 26265584 ~ 26270014 (-)
ENSDARG00000039887	c1qbp	5: 3914403 ~ 3927763 (-)
ENSDARG00000018687	itga2b	3: 21350509 ~ 21382491 (-)
ENSDARG00000069735	hbaa2	3: 55093581 ~ 55094399 (+)
ENSDARG00000056767	itgb3a	3: 19621034 ~ 19649535 (+)
ENSDARG00000044318	itgb7	6: 39703232 ~ 39727244 (-)
ENSDARG00000056178	dpt	6: 29184137 ~ 29195642 (-)
ENSDARG00000022689	itgb1b.2	2: 43638983 ~ 43653328 (-)
ENSDARG00000012942	itgb5	9: 22677503 ~ 22748015 (+)
ENSDARG00000006314	itgav	9: 11597500 ~ 11655031 (-)
ENSDARG00000089123	negaly6	16: 24698849 ~ 24703855 (-)
ENSDARG00000078717	itga8	16: 28383758 ~ 28512860 (+)
ENSDARG00000051912	hpxb	16: 2394193 ~ 2414063 (-)
ENSDARG00000075265	plaua	13: 25297257 ~ 25305179 (-)
ENSDARG00000045070	itgb3b	12: 26434478 ~ 26461744 (+)
ENSDARG00000039145	plaub	12: 46740584 ~ 46766300 (+)
ENSDARG00000055388	vtna	15: 28202170 ~ 28208926 (+)
ENSDARG00000029353	serpine2	15: 43241915 ~ 43284021 (-)
ENSDARG00000006353	itga5	23: 33447625 ~ 33558161 (-)
ENSDARG00000086337	si:dkey-102g19.3	21: 4702773 ~ 4707754 (+)
ENSDARG00000104775	ly6m2	21: 5472330 ~ 5481824 (+)
ENSDARG00000099416	ly6m3	21: 5494561 ~ 5498520 (+)
ENSDARG00000099332	ly6m5	21: 5518619 ~ 5521294 (+)
ENSDARG00000102159	ly6m6	21: 5531138 ~ 5542714 (+)
ENSDARG00000101786	si:ch211-134a4.6	21: 5560040 ~ 5569012 (+)
ENSDARG00000103060	ly6m7	21: 5580948 ~ 5587025 (+)
ENSDARG00000002494	itgb6	11: 10975012 ~ 11020857 (+)
ENSDARG00000029493	f9b	10: 26747755 ~ 26757486 (+)
ENSDARG00000071863	itgb1a	24: 1110138 ~ 1151483 (-)
ENSDARG00000045453	f13a1a.1	24: 2495197 ~ 2515623 (+)

MARKER

The figure above shows the marker information in datasets of Danio rerio.
: marker.
: potential marker.
Click the legend to hide the icon of the cell type, which can be used in the case of overlapping icons.

EXPRESSION

Dataset ID	Tissue / Organ	Experiment type	Sample	Cell type	Marker class	Evidence
PRJNA564810 (5dpf)	embryo	baseline	5dpf, a single-cell transcriptome atlas for zebrafish development	Hepatocytes (cluster: 20)	potential marker	NA
GSE150498 (untreated ctrl)	intestine	baseline	6dpf, untreated ctrl	Hepatocytes (cluster: 9)	potential marker	NA
GSE150498 (DSS treated)	intestine	disease	6dpf, DSS treated	Hepatocytes (cluster: 9)	potential marker	NA
GSE150498 (nod2-\|-, 2X DSS)	intestine	disease	6dpf, nod2-/-, 2X DSS
GSE137784 (no HCC)	liver	baseline	6mpf, male, isolated from the CreLox zebrafish with HCC	Hepatocytes (cluster: 1)	potential marker	NA
PRJNA415636 (brain)	brain	baseline	adult, Zebrabow M, brain
PRJNA554650 (6.5dpf)	brain	baseline	6.5dpf, whole brain of nr1d1:VNP fish
PRJNA564810 (2dpf)	embryo	baseline	2dpf, a single-cell transcriptome atlas for zebrafish development
GSE106587 (MZoep mutant)	embryo	baseline	12hpf, 6 somites, maternal zygotic oep tz57 mutant embryo
PRJNA640816 (2.9dpf)	embryo	baseline	2.9dpf, FACS isolated -4.9sox10:EGFP+ cells
PRJNA734348 (dome, dnmt1)	embryo	growth	4.3hpf, dome, oocyte microinjection with Rhodamine B and dnmt1 MO at oogenesis III stage (GV)
PRJNA564810 (1dpf)	embryo	baseline	1dpf, a single-cell transcriptome atlas for zebrafish development
PRJNA656271 (1.5dpf)	embryo	baseline	1.5dpf, FACS-isolated EGFP+ cells
GSE106587 (WT)	embryo	baseline	12hpf, 6 somites, wild-type TLAB embryo
PRJNA640816 (2dpf)	embryo	baseline	2dpf, FACS isolated -4.9sox10:EGFP+ cells
PRJNA656271 (2dpf)	embryo	baseline	2dpf, FACS-isolated EGFP+ cells
GSE126647 (Pbx4-depleted)	embryo	growth	1.17dpf, Pbx4-depleted nkx2.5:ZsYellow+ cells
GSE158142 (1.5dpf)	head	baseline	1.5dpf, untreatment
GSE158142 (14hpf)	head	baseline	14hpf, 10 somites, untreatment
GSE158142 (16hpf)	head	baseline	16hpf, 14 somites, untreatment
GSE158142 (24hpf)	head	baseline	24hpf, untreatment
GSE158142 (12hpf)	head	baseline	12hpf, 6 somites, untreatment
PRJNA415636 (pancreas, liver)	hepatopancreas	baseline	adult, Zebrabow M, pancreas and liver
PRJNA754013 (zebrafish)	hypothalamus	baseline	adult, male, female, untreatment
GSE150498 (nod2-\|-, 2X DSS+BZA)	intestine	disease	6dpf, nod2-/-, 2X DSS+BZA
GSE150498 (wildtype, 1X DSS)	intestine	disease	6dpf, wildtype, 1X DSS
GSE150498 (nod2-\|-, 1X DSS)	intestine	disease	6dpf, nod2-/-, 1X DSS
GSE150498 (nod2-\|-, untreated)	intestine	disease	6dpf, nod2-/-, untreated
GSE137784 (HCC, CreLox)	liver	disease	6mpf, male, isolated from the zebrafish without HCC
GSE137784 (HCC, HepABC)	liver	disease	6mpf, male, isolated from the Tg(fabp10a:pt-B-cat)(HepABC) zebrafish with HCC
GSE123241 (fgf3 mutants)	neuromast	regeneration	5dpf, fgf3 mutants during sensory hair cell regeneration, lateral line sensory
PRJNA668529 (3h)	olfactory rosette	disease	3mpf, intranasal 100ng r-Spike 3 hours
GSE148591 (6mpf)	pituitary	baseline	6mpf, male, Sox17:CreERT2
GSE148591 (3mpf)	pituitary	transplant	3mpf, graft transplantation during early embryogenesis
PRJNA415636 (primary pancreatic islet)	primary pancreatic islet	baseline	adult, Zebrabow M, primary pancreatic islet
GSE122680 (3dpf)	retina	baseline	3dpf, WT, untreatment
GSE122680 (2dpf)	retina	baseline	2dpf, WT, untreatment
GSE122680 (24hpf)	retina	baseline	24hpf, WT, untreatment
GSE152982 (wild type)	trunk	baseline	1.25dpf, untreatment
PRJNA641144 (M_PRO)	tumor	disease	adult, ZMEL1-PRO cells in vivo metastases
PRJNA641144 (M_INV)	tumor	disease	adult, ZMEL1-INV cells in vivo metastases
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-
GSE158099 (WT)	whole body	baseline	16dpf, cd41:GFPlow-WT
GSE176129 (pdgfrb-positive)	whole body	baseline	5dpf, FACS-isolated pdgfrb-positive cells
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-

After clicking the magnifying glass button, the clustering and expression information will be displayed below.

GENE ID: ENSDARG00000055388

MARKER

EXPRESSION

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences