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| Symbol | Location | Gene type | Genome version | Species |
|---|---|---|---|---|
| si:rp71-17i16.6 | 23: 20340200 ~ 20345473 (-) | protein_coding | GRCz11 | Danio rerio |
: marker.| Dataset ID | Tissue / Organ | Experiment type | Sample | Cell type | Marker class | Evidence | |
|---|---|---|---|---|---|---|---|
| PRJNA554650 (6.5dpf) | brain | baseline | 6.5dpf, whole brain of nr1d1:VNP fish |
Endothelium (cluster: 17) |
potential marker |
NA |
|
| GSE158142 (8dpf) | brain, eye | baseline | 8dpf, untreatment | ||||
| GSE144944 (fgfr3 -|-) | cranial vault | growth | 1mpf, fgfr3 -/- |
Epidermal cells (cluster: 15) |
potential marker |
NA |
|
| GSE168695 (5dpf) | embryo | baseline | 5dpf, GFP+ cells isolated from 5 dpf cldnb:lyn-EGFP embryos |
Ionocyte progenitors (cluster: 6) |
potential marker |
NA |
|
| PRJNA564810 (2dpf) | embryo | baseline | 2dpf, a single-cell transcriptome atlas for zebrafish development |
Optic vesicle (cluster: 22) |
potential marker |
NA |
|
| PRJNA564810 (1dpf) | embryo | baseline | 1dpf, a single-cell transcriptome atlas for zebrafish development |
Otic (cluster: 20) |
potential marker |
NA |
|
| PRJNA668529 (3d) | olfactory rosette | disease | 3mpf, intranasal 100ng r-Spike 3 days |
Ciliated olfactory sensory neuron (cluster: 5) Microvillus olfactory sensory neuron (cluster: 8) |
potential marker potential marker |
NA NA |
|
| PRJNA668529 (3h) | olfactory rosette | disease | 3mpf, intranasal 100ng r-Spike 3 hours |
Ciliated olfactory sensory neuron (cluster: 1) |
potential marker |
NA |
|
| PRJNA668529 (control) | olfactory rosette | baseline | 3mpf, intranasal PBS |
Ciliated olfactory sensory neuron (cluster: 1) |
potential marker |
NA |
|
| PRJNA415636 (primary pancreatic islet) | primary pancreatic islet | baseline | adult, Zebrabow M, primary pancreatic islet |
Pancreas endocrine cells (cluster: 5) |
potential marker |
NA |
|
| GSE158099 (runx1 -|-) | whole body | hematopoietic | 2.5dpf, cd41:GFPlow-runx1-/- |
Epidermal cells (cluster: 10) |
potential marker |
NA |
|
| GSE158142 (5dpf) | brain, eye | baseline | 5dpf, untreatment | ||||
| GSE144944 (fgfr3 +|+) | cranial vault | baseline | 1mpf, fgfr3 +/+ | ||||
| GSE126647 (control) | embryo | baseline | 1.17dpf, control nkx2.5:ZsYellow+ cells | ||||
| GSE126647 (Pbx4-depleted) | embryo | growth | 1.17dpf, Pbx4-depleted nkx2.5:ZsYellow+ cells | ||||
| PRJNA564810 (5dpf) | embryo | baseline | 5dpf, a single-cell transcriptome atlas for zebrafish development | ||||
| GSE158142 (18hpf) | head | baseline | 18hpf, 18 somites, untreatment | ||||
| GSE158142 (3dpf) | head | baseline | 3dpf, untreatment | ||||
| GSE158142 (20hpf) | head | baseline | 20hpf, 21-22 somites, untreatment | ||||
| GSE158142 (24hpf) | head | baseline | 24hpf, untreatment | ||||
| GSE158142 (16hpf) | head | baseline | 16hpf, 14 somites, untreatment | ||||
| GSE158142 (1.5dpf) | head | baseline | 1.5dpf, untreatment | ||||
| PRJNA415636 (pancreas, liver) | hepatopancreas | baseline | adult, Zebrabow M, pancreas and liver | ||||
| GSE150498 (untreated ctrl) | intestine | baseline | 6dpf, untreated ctrl | ||||
| GSE150498 (DSS treated) | intestine | disease | 6dpf, DSS treated | ||||
| GSE137784 (HCC, HepABC) | liver | disease | 6mpf, male, isolated from the Tg(fabp10a:pt-B-cat)(HepABC) zebrafish with HCC | ||||
| GSE137784 (HCC, CreLox) | liver | disease | 6mpf, male, isolated from the zebrafish without HCC | ||||
| GSE137784 (no HCC) | liver | baseline | 6mpf, male, isolated from the CreLox zebrafish with HCC | ||||
| GSE148591 (3mpf) | pituitary | transplant | 3mpf, graft transplantation during early embryogenesis | ||||
| GSE122680 (3dpf) | retina | baseline | 3dpf, WT, untreatment | ||||
| GSE122680 (14dpf) | retina | baseline | 14dpf, WT, untreatment | ||||
| GSE122680 (24hpf) | retina | baseline | 24hpf, WT, untreatment | ||||
| PRJNA672101 (nrl-KO) | retina | growth | 5mpf, three retinas from nrl-KO zebrafsih | ||||
| GSE122680 (2dpf) | retina | baseline | 2dpf, WT, untreatment | ||||
| GSE122680 (1.5dpf) | retina | baseline | 1.5dpf, WT, untreatment | ||||
| GSE152982 (wild type) | trunk | baseline | 1.25dpf, untreatment | ||||
| GSE131136 (all) | trunk, skin | baseline | 5dpf, sox10:CRE positive cells from 5dpf and post-embryonic zebrafish trunks with and without thyroid hormone | ||||
| GSE158099 (WT) | whole body | baseline | 16dpf, cd41:GFPlow-WT | ||||
| GSE158099 (WT) | whole body | baseline | 10dpf, cd41:GFPlow-WT | ||||
| GSE158099 (runx1 -|-) | whole body | hematopoietic | 16dpf, cd41:GFPlow-runx1-/- | ||||
| GSE176129 (pdgfrb-positive) | whole body | baseline | 5dpf, FACS-isolated pdgfrb-positive cells | ||||
| GSE158099 (WT) | whole body | baseline | 6dpf, cd41:GFPlow-WT | ||||
| GSE158099 (runx1 -|-) | whole body | hematopoietic | 16dpf, cd41:GFPlow-runx1-/- | ||||
| GSE158099 (runx1 -|-) | whole body | hematopoietic | 10dpf, cd41:GFPlow-runx1-/- | ||||
| GSE158099 (runx1 -|-) | whole body | hematopoietic | 6dpf, cd41:GFPlow-runx1-/- | ||||
| GSE158099 (WT) | whole body | baseline | 2.5dpf, cd41:GFPlow-WT |