Fish Single-cell RNA Database

GENE ID: ENSDARG00000103586

Symbol	Location	Gene type	Genome version	Species
si:dkey-65j6.2	23: 43177290 ~ 43252396 (+)	protein_coding	GRCz11	Danio rerio

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000103586 (si:dkey-65j6.2), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

Gene ID	Symbol	Location
ENSDARG00000076919	igdcc4	7: 31625662 ~ 31759602 (-)
ENSDARG00000028401	rhogc	5: 36595149 ~ 36597636 (-)
ENSDARG00000016868	rhobtb4	5: 43427841 ~ 43502675 (+)
ENSDARG00000070735	rnd2	3: 19850937 ~ 19899914 (-)
ENSDARG00000054649	rac1l	1: 57170145 ~ 57172294 (-)
ENSDARG00000005626	NA	1: 53980120 ~ 53988017 (-)
ENSDARG00000007396	rnd3b	9: 23026324 ~ 23033818 (-)
ENSDARG00000015627	rgs6	20: 28511941 ~ 28642061 (-)
ENSDARG00000074828	rhobtb2a	8: 50493095 ~ 50502243 (+)
ENSDARG00000030608	rhogd	14: 12169979 ~ 12176369 (+)
ENSDARG00000100044	prtga	18: 618005 ~ 623062 (+)
ENSDARG00000061685	hcn4	18: 1004814 ~ 1143998 (-)
ENSDARG00000045180	acta2	12: 17100021 ~ 17116481 (+)
ENSDARG00000079468	rhobtb1	12: 8003872 ~ 8039095 (+)
ENSDARG00000078557	si:ch211-57n23.4	19: 41551335 ~ 41597464 (+)
ENSDARG00000012968	rhoub	15: 8990577 ~ 9002155 (-)
ENSDARG00000068653	rhoga	15: 38201964 ~ 38218320 (-)
ENSDARG00000103586	si:dkey-65j6.2	23: 43177290 ~ 43252396 (+)
ENSDARG00000030547	rnd1a	23: 17800717 ~ 17815253 (+)
ENSDARG00000089340	rhobtb2b	10: 42678520 ~ 42716739 (+)
ENSDARG00000076799	rnd3a	22: 12431608 ~ 12449572 (+)

MARKER

The figure above shows the marker information in datasets of Danio rerio.
: marker.
: potential marker.
Click the legend to hide the icon of the cell type, which can be used in the case of overlapping icons.

EXPRESSION

Dataset ID	Tissue / Organ	Experiment type	Sample	Cell type	Marker class	Evidence
PRJNA564810 (1dpf)	embryo	baseline	1dpf, a single-cell transcriptome atlas for zebrafish development	Skeletal muscle cells (cluster: 15)	potential marker	NA
PRJNA551501 (8mpf)	thyroid gland	baseline	8mpf, Tg(tg:mVenus-T2A-NTR)
GSE176129 (pdgfrb-positive)	whole body	baseline	5dpf, FACS-isolated pdgfrb-positive cells	Skeletal muscle cells (cluster: 38)	potential marker	NA
GSE126647 (Pbx4-depleted)	embryo	growth	1.17dpf, Pbx4-depleted nkx2.5:ZsYellow+ cells
GSE106587 (WT)	embryo	baseline	12hpf, 6 somites, wild-type TLAB embryo
GSE168695 (5dpf)	embryo	baseline	5dpf, GFP+ cells isolated from 5 dpf cldnb:lyn-EGFP embryos
PRJNA734348 (dome, dnmt1)	embryo	growth	4.3hpf, dome, oocyte microinjection with Rhodamine B and dnmt1 MO at oogenesis III stage (GV)
PRJNA564810 (5dpf)	embryo	baseline	5dpf, a single-cell transcriptome atlas for zebrafish development
PRJNA656271 (1.5dpf)	embryo	baseline	1.5dpf, FACS-isolated EGFP+ cells
GSE126647 (control)	embryo	baseline	1.17dpf, control nkx2.5:ZsYellow+ cells
PRJNA564810 (2dpf)	embryo	baseline	2dpf, a single-cell transcriptome atlas for zebrafish development
GSE161712 (M. marinum)	granulomas	disease	adult, infected with bacteria of M. marinum
GSE158142 (18hpf)	head	baseline	18hpf, 18 somites, untreatment
GSE158142 (12hpf)	head	baseline	12hpf, 6 somites, untreatment
GSE158142 (24hpf)	head	baseline	24hpf, untreatment
GSE158142 (14hpf)	head	baseline	14hpf, 10 somites, untreatment
GSE158142 (3dpf)	head	baseline	3dpf, untreatment
GSE158142 (16hpf)	head	baseline	16hpf, 14 somites, untreatment
PRJNA608912 (kit_7dpi)	heart	regeneration	5mpf, kit mutant, 7 days post injury
PRJNA608912 (wt_14dpi)	heart	regeneration	5mpf, wild type, 14 days post injury
PRJNA608912 (wt_unjuried)	heart	baseline	5mpf, wild type, uninjured
PRJNA608912 (kit_14dpi)	heart	regeneration	5mpf, kit mutant, 14 days post injury
PRJNA608912 (kit_uninjuried)	heart	regeneration	5mpf, kit mutant, uninjured
PRJNA608912 (wt_2dpi)	heart	regeneration	5mpf, wild type, 2 days post injury
PRJNA608912 (kit_2dpi)	heart	regeneration	5mpf, kit mutant, 2 days post injury
PRJNA608912 (wt_7dpi)	heart	regeneration	5mpf, wild type, 7 days post injury
PRJNA415636 (heart, blood)	heart, blood	baseline	adult, Zebrabow M, heart and blood
PRJNA415636 (pancreas, liver)	hepatopancreas	baseline	adult, Zebrabow M, pancreas and liver
PRJNA754013 (zebrafish)	hypothalamus	baseline	adult, male, female, untreatment
GSE150498 (wildtype, 1X DSS)	intestine	disease	6dpf, wildtype, 1X DSS
GSE150498 (nod2-\|-, 1X DSS)	intestine	disease	6dpf, nod2-/-, 1X DSS
PRJNA668529 (3h)	olfactory rosette	disease	3mpf, intranasal 100ng r-Spike 3 hours
GSE148591 (6mpf)	pituitary	baseline	6mpf, male, Sox17:CreERT2
GSE148591 (3mpf)	pituitary	transplant	3mpf, graft transplantation during early embryogenesis
GSE122680 (24hpf)	retina	baseline	24hpf, WT, untreatment
GSE175929 (5mpf)	retina	baseline	5mpf, GFP-positive cells collected from two transgenic zebrafish, Tg(rho:EGFP)ja2Tg and Tg(gnat2:EGFP)ja23Tg
PRJNA672101 (nrl-KO)	retina	growth	5mpf, three retinas from nrl-KO zebrafsih
PRJNA672101 (WT)	retina	baseline	5mpf, three retinas from WT zebrafsih
PRJNA551501 (2mpf)	thyroid gland	baseline	2mpf, Tg(tg:mVenus-T2A-NTR)
GSE152982 (wild type)	trunk	baseline	1.25dpf, untreatment
GSE131136 (all)	trunk, skin	baseline	5dpf, sox10:CRE positive cells from 5dpf and post-embryonic zebrafish trunks with and without thyroid hormone
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-
GSE158099 (runx1 -\|-)	whole body	hematopoietic	10dpf, cd41:GFPlow-runx1-/-
GSE158099 (WT)	whole body	baseline	16dpf, cd41:GFPlow-WT
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-

After clicking the magnifying glass button, the clustering and expression information will be displayed below.

GENE ID: ENSDARG00000103586

MARKER

EXPRESSION

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences