Fish Single-cell RNA Database

GENE ID: ENSDARG00000079443

Symbol	Location	Gene type	Genome version	Species
vipb	11: 43401201 ~ 43414172 (+)	protein_coding	GRCz11	Danio rerio

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000079443 (vipb), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

Gene ID	Symbol	Location
ENSDARG00000056590	calca	7: 27680556 ~ 27696958 (-)
ENSDARG00000053708	ghrhrb	6: 32882821 ~ 32961129 (+)
ENSDARG00000053724	adcyap1r1a	6: 32966750 ~ 33023745 (-)
ENSDARG00000044326	BX950188.1	6: 36465347 ~ 36542102 (+)
ENSDARG00000105201	adcyap1r1a	2: 50862527 ~ 50899928 (+)
ENSDARG00000104961	ghrhra	2: 50906097 ~ 50966124 (-)
ENSDARG00000014190	sst2	2: 5726353 ~ 5728843 (-)
ENSDARG00000028878	vipr1a	2: 21229909 ~ 21300115 (+)
ENSDARG00000070810	ccka	16: 5774977 ~ 5779201 (+)
ENSDARG00000031598	calb1	16: 36765934 ~ 36798783 (-)
ENSDARG00000006868	trh	8: 54220551 ~ 54223316 (-)
ENSDARG00000052567	tmem35	14: 41276307 ~ 41285392 (-)
ENSDARG00000093493	urp1	14: 33892300 ~ 33894915 (-)
ENSDARG00000078247	vip	13: 46987955 ~ 46991577 (-)
ENSDARG00000041062	calb2a	18: 21198762 ~ 21218851 (-)
ENSDARG00000057887	nts	18: 16330025 ~ 16339902 (+)
ENSDARG00000099218	ghrhr2	12: 4845448 ~ 4854555 (+)
ENSDARG00000036222	npy	19: 20110699 ~ 20114149 (-)
ENSDARG00000014490	tac1	19: 25649626 ~ 25653185 (+)
ENSDARG00000040799	sst1.1	15: 36156986 ~ 36158851 (+)
ENSDARG00000095788	ghrhrl	23: 40109353 ~ 40126859 (+)
ENSDARG00000043074	grp	21: 10765886 ~ 10773344 (-)
ENSDARG00000079443	vipb	11: 43401201 ~ 43414172 (+)
ENSDARG00000069481	ghrh	11: 15345654 ~ 15435495 (-)
ENSDARG00000012353	vipr2	24: 27268001 ~ 27346951 (+)
ENSDARG00000059058	vipr1b	24: 20708174 ~ 20808283 (-)
ENSDARG00000034705	pvalb7	22: 29165330 ~ 29242347 (-)

MARKER

The figure above shows the marker information in datasets of Danio rerio.
: marker.
: potential marker.
Click the legend to hide the icon of the cell type, which can be used in the case of overlapping icons.

EXPRESSION

Dataset ID	Tissue / Organ	Experiment type	Sample	Cell type	Marker class	Evidence
GSE131136 (all)	trunk, skin	baseline	5dpf, sox10:CRE positive cells from 5dpf and post-embryonic zebrafish trunks with and without thyroid hormone	Neuron (cluster: 15)	potential marker	NA
PRJNA554650 (6.5dpf)	brain	baseline	6.5dpf, whole brain of nr1d1:VNP fish
GSE158142 (5dpf)	brain, eye	baseline	5dpf, untreatment
GSE158142 (8dpf)	brain, eye	baseline	8dpf, untreatment
GSE158142 (15dpf)	brain, eye	baseline	15dpf, untreatment
PRJNA610520 (3.5dpf)	caudal hematopoietic tissue	baseline	3.5dpf, the mixture of same amount of kdrl:mCherry+ cells, CD41:GFP+ cells and double negative cells.
PRJNA610520 (4.5dpf)	caudal hematopoietic tissue	baseline	4.5dpf, the mixture of same amount of kdrl:mCherry+ cells, CD41:GFP+ cells and double negative cells.
PRJNA640816 (2.9dpf)	embryo	baseline	2.9dpf, FACS isolated -4.9sox10:EGFP+ cells
PRJNA564810 (5dpf)	embryo	baseline	5dpf, a single-cell transcriptome atlas for zebrafish development
GSE158142 (3dpf)	head	baseline	3dpf, untreatment
GSE150498 (untreated ctrl)	intestine	baseline	6dpf, untreated ctrl
GSE150498 (DSS treated)	intestine	disease	6dpf, DSS treated
GSE150498 (wildtype, untreated)	intestine	baseline	6dpf, wildtype, untreated
GSE150498 (nod2-\|-, untreated)	intestine	disease	6dpf, nod2-/-, untreated
GSE150498 (wildtype, 1X DSS)	intestine	disease	6dpf, wildtype, 1X DSS
GSE150498 (nod2-\|-, 1X DSS)	intestine	disease	6dpf, nod2-/-, 1X DSS
GSE150498 (wildtype, 2X DSS)	intestine	disease	6dpf, wildtype, 2X DSS
GSE150498 (wildtype, 2X DSS+BZA)	intestine	disease	6dpf, wildtype, 2X DSS+BZA
GSE150498 (nod2-\|-, 2X DSS)	intestine	disease	6dpf, nod2-/-, 2X DSS
GSE150498 (nod2-\|-, 2X DSS+BZA)	intestine	disease	6dpf, nod2-/-, 2X DSS+BZA
PRJNA668529 (3d)	olfactory rosette	disease	3mpf, intranasal 100ng r-Spike 3 days
PRJNA668529 (3h)	olfactory rosette	disease	3mpf, intranasal 100ng r-Spike 3 hours
PRJNA668529 (control)	olfactory rosette	baseline	3mpf, intranasal PBS
GSE148591 (6mpf)	pituitary	baseline	6mpf, male, Sox17:CreERT2
GSE148591 (3mpf)	pituitary	transplant	3mpf, graft transplantation during early embryogenesis
PRJNA415636 (primary pancreatic islet)	primary pancreatic islet	baseline	adult, Zebrabow M, primary pancreatic islet
GSE176129 (pdgfrb-positive)	whole body	baseline	5dpf, FACS-isolated pdgfrb-positive cells
GSE158099 (WT)	whole body	baseline	6dpf, cd41:GFPlow-WT
GSE158099 (WT)	whole body	baseline	16dpf, cd41:GFPlow-WT

After clicking the magnifying glass button, the clustering and expression information will be displayed below.

GENE ID: ENSDARG00000079443

MARKER

EXPRESSION

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences