Fish Single-cell RNA Database

GENE ID: ENSDARG00000104643

Symbol	Location	Gene type	Genome version	Species
tuba7l	10: 44917351 ~ 44924289 (-)	protein_coding	GRCz11	Danio rerio

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000104643 (tuba7l), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

Gene ID	Symbol	Location
ENSDARG00000004196	tnfsf10l	7: 22911610 ~ 22956889 (-)
ENSDARG00000041723	NA	5: 33018764 ~ 33022014 (-)
ENSDARG00000061651	marveld2b	5: 26204561 ~ 26211846 (+)
ENSDARG00000053066	tubb1	6: 49881864 ~ 49888418 (+)
ENSDARG00000039522	tubb2	2: 2010277 ~ 2020044 (-)
ENSDARG00000016301	zgc:65894	1: 56217388 ~ 56223913 (-)
ENSDARG00000037997	tubb5	16: 10318893 ~ 10327620 (+)
ENSDARG00000030106	stmn4	20: 34773646 ~ 34868814 (-)
ENSDARG00000043982	tube1	20: 262995 ~ 318105 (+)
ENSDARG00000096620	tube1	20: 263056 ~ 277689 (+)
ENSDARG00000007774	vash2	20: 37866171 ~ 37916522 (+)
ENSDARG00000087443	ptp4a2a	17: 14692808 ~ 14705075 (-)
ENSDARG00000043932	stmn4l	17: 12698532 ~ 12711195 (+)
ENSDARG00000005814	klhl10a	17: 4386649 ~ 4396692 (-)
ENSDARG00000002344	tubb4b	14: 5861435 ~ 5865146 (+)
ENSDARG00000006174	lrrc23	23: 20127883 ~ 20133994 (-)
ENSDARG00000099921	tbce	11: 44605727 ~ 44622478 (-)
ENSDARG00000104643	tuba7l	10: 44917351 ~ 44924289 (-)
ENSDARG00000025076	marveld2a	10: 2943676 ~ 2971407 (-)
ENSDARG00000104801	tubb6	24: 2941000 ~ 2947406 (-)
ENSDARG00000043196	rnasel2	22: 6293563 ~ 6294749 (+)

MARKER

The figure above shows the marker information in datasets of Danio rerio.
: marker.
: potential marker.
Click the legend to hide the icon of the cell type, which can be used in the case of overlapping icons.

EXPRESSION

Dataset ID	Tissue / Organ	Experiment type	Sample	Cell type	Marker class	Evidence
GSE158099 (WT)	whole body	baseline	16dpf, cd41:GFPlow-WT	Epidermal cells (cluster: 14)	potential marker	NA
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-	Epidermal cells (cluster: 13)	potential marker	NA
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-	Epidermal cells (cluster: 13)	potential marker	NA
PRJNA554650 (6.5dpf)	brain	baseline	6.5dpf, whole brain of nr1d1:VNP fish
GSE130526 (fin)	dorsal and anal fin	baseline	adult, fins were amputated from fish expressing both pnp4a:palmmCherry and tyrp1b:palmmCherry
PRJNA564810 (1dpf)	embryo	baseline	1dpf, a single-cell transcriptome atlas for zebrafish development
PRJNA706197 (20hpf)	embryo	baseline	20hpf, FACS sorted sox10:nEOS cells
GSE173972 (WT, ezh1+\|+)	embryo	baseline	1.25dpf, Kdrl-positive embryos
GSE106587 (WT)	embryo	baseline	12hpf, 6 somites, wild-type TLAB embryo
PRJNA640816 (2dpf)	embryo	baseline	2dpf, FACS isolated -4.9sox10:EGFP+ cells
PRJNA564810 (5dpf)	embryo	baseline	5dpf, a single-cell transcriptome atlas for zebrafish development
GSE173972 (HET, ezh1+\|-)	embryo	hematopoietic	1.25dpf, Kdrl-positive embryos
GSE106587 (MZoep mutant)	embryo	baseline	12hpf, 6 somites, maternal zygotic oep tz57 mutant embryo
PRJNA564810 (2dpf)	embryo	baseline	2dpf, a single-cell transcriptome atlas for zebrafish development
GSE173972 (KO, ezh1-\|-)	embryo	hematopoietic	1.25dpf, Kdrl-positive embryos
GSE158142 (3dpf)	head	baseline	3dpf, untreatment
GSE158142 (18hpf)	head	baseline	18hpf, 18 somites, untreatment
GSE158142 (12hpf)	head	baseline	12hpf, 6 somites, untreatment
GSE158142 (20hpf)	head	baseline	20hpf, 21-22 somites, untreatment
GSE158142 (14hpf)	head	baseline	14hpf, 10 somites, untreatment
GSE158142 (1.5dpf)	head	baseline	1.5dpf, untreatment
GSE158142 (16hpf)	head	baseline	16hpf, 14 somites, untreatment
GSE150498 (nod2-\|-, 1X DSS)	intestine	disease	6dpf, nod2-/-, 1X DSS
GSE137784 (HCC, HepABC)	liver	disease	6mpf, male, isolated from the Tg(fabp10a:pt-B-cat)(HepABC) zebrafish with HCC
GSE137784 (HCC, CreLox)	liver	disease	6mpf, male, isolated from the zebrafish without HCC
GSE137784 (no HCC)	liver	baseline	6mpf, male, isolated from the CreLox zebrafish with HCC
GSE123241 (fgf3 mutants)	neuromast	regeneration	5dpf, fgf3 mutants during sensory hair cell regeneration, lateral line sensory
PRJNA605021 (supporting cells)	neuromast	baseline	7dpf, posterior lateral-line neuromast cells were isolated from the dissociated trunks of Tg[Et(krt4:EGFP)sqgw57A] transgenic zebrafish larvae
PRJNA668529 (3d)	olfactory rosette	disease	3mpf, intranasal 100ng r-Spike 3 days
GSE122680 (3dpf)	retina	baseline	3dpf, WT, untreatment
GSE175929 (5mpf)	retina	baseline	5mpf, GFP-positive cells collected from two transgenic zebrafish, Tg(rho:EGFP)ja2Tg and Tg(gnat2:EGFP)ja23Tg
PRJNA672101 (WT)	retina	baseline	5mpf, three retinas from WT zebrafsih
GSE122680 (14dpf)	retina	baseline	14dpf, WT, untreatment
GSE122680 (2dpf)	retina	baseline	2dpf, WT, untreatment
GSE122680 (24hpf)	retina	baseline	24hpf, WT, untreatment
GSE163907 (24hpf)	trunk	baseline	24hpf, trunk tg(sox10:GFP) positive cells
GSE131136 (all)	trunk, skin	baseline	5dpf, sox10:CRE positive cells from 5dpf and post-embryonic zebrafish trunks with and without thyroid hormone
GSE159709 (melanoma)	tumor	disease	adult, equal numbers of sorted GFP+ (tumor) and GFP- (macroenvironment) cells
GSE158099 (runx1 -\|-)	whole body	hematopoietic	10dpf, cd41:GFPlow-runx1-/-
GSE158099 (runx1 -\|-)	whole body	hematopoietic	6dpf, cd41:GFPlow-runx1-/-
GSE158099 (WT)	whole body	baseline	10dpf, cd41:GFPlow-WT
GSE176129 (pdgfrb-positive)	whole body	baseline	5dpf, FACS-isolated pdgfrb-positive cells

After clicking the magnifying glass button, the clustering and expression information will be displayed below.

GENE ID: ENSDARG00000104643

MARKER

EXPRESSION

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences