Fish Single-cell RNA Database

GENE ID: ENSDARG00000056511

Symbol	Location	Gene type	Genome version	Species
arr3a	10: 26800213 ~ 26811397 (+)	protein_coding	GRCz11	Danio rerio

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000056511 (arr3a), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

Gene ID	Symbol	Location
ENSDARG00000045677	opn1sw1	4: 13577665 ~ 13580348 (-)
ENSDARG00000027424	slc25a3a	4: 16844973 ~ 16853474 (-)
ENSDARG00000015310	pitpnbl	3: 15332268 ~ 15352438 (-)
ENSDARG00000037941	syt5a	3: 32142382 ~ 32151167 (+)
ENSDARG00000010680	gngt2a	3: 23092762 ~ 23096141 (+)
ENSDARG00000056791	pde6ga	3: 19460991 ~ 19466015 (+)
ENSDARG00000044199	gnat1	6: 42918933 ~ 42930302 (+)
ENSDARG00000097008	opn1mw1	6: 41181869 ~ 41183823 (+)
ENSDARG00000007480	rpe65a	2: 1428696 ~ 1443692 (-)
ENSDARG00000017634	pdcb	20: 34084331 ~ 34090740 (-)
ENSDARG00000042529	gnat2	8: 25225590 ~ 25247284 (-)
ENSDARG00000005776	guk1b	8: 18230948 ~ 18239498 (-)
ENSDARG00000002193	rho	8: 54076195 ~ 54077740 (-)
ENSDARG00000098051	opn6b	17: 28760586 ~ 28770800 (-)
ENSDARG00000014840	prph2b	13: 3252950 ~ 3258772 (+)
ENSDARG00000054890	rgra	13: 29446226 ~ 29455859 (-)
ENSDARG00000096519	irbpl	12: 2660733 ~ 2663471 (+)
ENSDARG00000100397	pde6c	12: 5129245 ~ 5154099 (+)
ENSDARG00000103543	gngt2b	12: 3249054 ~ 3252263 (-)
ENSDARG00000002696	gnb3b	19: 5106226 ~ 5135345 (-)
ENSDARG00000035798	gngt1	19: 40856534 ~ 40859468 (+)
ENSDARG00000009637	rcvrn3	19: 10339538 ~ 10352579 (+)
ENSDARG00000027495	elovl4b	23: 40410644 ~ 40438581 (+)
ENSDARG00000044684	rbp4l	21: 20338613 ~ 20342096 (-)
ENSDARG00000111106	arl3l1	21: 33172526 ~ 33187913 (+)
ENSDARG00000017274	opn1sw2	11: 25459697 ~ 25475403 (+)
ENSDARG00000043542	zpr1	10: 29820172 ~ 29831944 (-)
ENSDARG00000056511	arr3a	10: 26800213 ~ 26811397 (+)
--	pde6h	--

MARKER

The figure above shows the marker information in datasets of Danio rerio.
: marker.
: potential marker.
Click the legend to hide the icon of the cell type, which can be used in the case of overlapping icons.

EXPRESSION

Dataset ID	Tissue / Organ	Experiment type	Sample	Cell type	Marker class	Evidence
PRJNA554650 (6.5dpf)	brain	baseline	6.5dpf, whole brain of nr1d1:VNP fish	Pineal gland (cluster: 23)	potential marker	NA
GSE158142 (5dpf)	brain, eye	baseline	5dpf, untreatment	Retina (cluster: 10)	potential marker	NA
PRJNA564810 (5dpf)	embryo	baseline	5dpf, a single-cell transcriptome atlas for zebrafish development	Neuron (cluster: 11)	potential marker	NA
GSE158142 (3dpf)	head	baseline	3dpf, untreatment	Retina (cluster: 11)	potential marker	NA
GSE148591 (6mpf)	pituitary	baseline	6mpf, male, Sox17:CreERT2	Corticotropes (cluster: 3)	potential marker	NA
GSE148591 (3mpf)	pituitary	transplant	3mpf, graft transplantation during early embryogenesis	Corticotropes (cluster: 5)	potential marker	NA
GSE175929 (5mpf)	retina	baseline	5mpf, GFP-positive cells collected from two transgenic zebrafish, Tg(rho:EGFP)ja2Tg and Tg(gnat2:EGFP)ja23Tg	Blue cone opsin (cluster: 1) Red cones (cluster: 7) Green cone opsin (cluster: 8)	potential marker potential marker potential marker	NA NA NA
GSE122680 (3dpf)	retina	baseline	3dpf, WT, untreatment	Photoreceptor cells (cluster: 8)	potential marker	NA
PRJNA672101 (nrl-KO)	retina	growth	5mpf, three retinas from nrl-KO zebrafsih	Cone (cluster: 3)	potential marker	NA
PRJNA672101 (WT)	retina	baseline	5mpf, three retinas from WT zebrafsih	Cone (cluster: 4)	potential marker	NA
PRJNA415636 (brain)	brain	baseline	adult, Zebrabow M, brain
GSE158142 (8dpf)	brain, eye	baseline	8dpf, untreatment
GSE158142 (15dpf)	brain, eye	baseline	15dpf, untreatment
GSE158849 (unlabeled)	embryo	baseline	6hpf, WT, 4sUTP injected (unlabeled)
PRJNA734348 (dome, control)	embryo	baseline	4.3hpf, dome, oocyte microinjection with Rhodamine B and control MO at oogenesis III stage (GV)
PRJNA656271 (24hpf)	embryo	baseline	24hpf, FACS-isolated EGFP+ cells
PRJNA656271 (2dpf)	embryo	baseline	2dpf, FACS-isolated EGFP+ cells
GSE168695 (5dpf)	embryo	baseline	5dpf, GFP+ cells isolated from 5 dpf cldnb:lyn-EGFP embryos
PRJNA564810 (2dpf)	embryo	baseline	2dpf, a single-cell transcriptome atlas for zebrafish development
PRJNA564810 (1dpf)	embryo	baseline	1dpf, a single-cell transcriptome atlas for zebrafish development
GSE161712 (M. marinum)	granulomas	disease	adult, infected with bacteria of M. marinum
GSE158142 (1.5dpf)	head	baseline	1.5dpf, untreatment
GSE158142 (2dpf)	head	baseline	2dpf, untreatment
PRJNA668529 (3d)	olfactory rosette	disease	3mpf, intranasal 100ng r-Spike 3 days
GSE122680 (1.5dpf)	retina	baseline	1.5dpf, WT, untreatment
GSE122680 (14dpf)	retina	baseline	14dpf, WT, untreatment
GSE122680 (2dpf)	retina	baseline	2dpf, WT, untreatment
GSE176129 (pdgfrb-positive)	whole body	baseline	5dpf, FACS-isolated pdgfrb-positive cells
GSE158099 (WT)	whole body	baseline	2.5dpf, cd41:GFPlow-WT
GSE158099 (runx1 -\|-)	whole body	hematopoietic	10dpf, cd41:GFPlow-runx1-/-
GSE158099 (WT)	whole body	baseline	16dpf, cd41:GFPlow-WT
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-

After clicking the magnifying glass button, the clustering and expression information will be displayed below.

GENE ID: ENSDARG00000056511

MARKER

EXPRESSION

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences