Fish Single-cell RNA Database

GENE ID: ENSDARG00000058503

Symbol	Location	Gene type	Genome version	Species
flt3	24: 21691939 ~ 21713883 (-)	protein_coding	GRCz11	Danio rerio

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000058503 (flt3), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

Gene ID	Symbol	Location
ENSDARG00000045856	fgf6b	4: 5180650 ~ 5183337 (+)
ENSDARG00000005651	hrasb	7: 49638413 ~ 49654492 (-)
ENSDARG00000035377	fgf5	5: 39537195 ~ 39556884 (+)
ENSDARG00000100475	fgf10b	5: 8769069 ~ 8817841 (-)
ENSDARG00000098578	pdgfab	3: 12924930 ~ 12970428 (-)
ENSDARG00000105276	grb2a	6: 19344749 ~ 19381993 (-)
ENSDARG00000014050	ngfb	6: 49169420 ~ 49215827 (-)
ENSDARG00000069640	vegfc	1: 38850830 ~ 38908197 (-)
ENSDARG00000007356	fgf20a	1: 16393077 ~ 16394814 (-)
ENSDARG00000039615	fgf8b	1: 31638274 ~ 31669901 (+)
ENSDARG00000078625	fgf9	9: 19604867 ~ 19610436 (-)
ENSDARG00000103542	vegfaa	16: 4287542 ~ 4317879 (-)
ENSDARG00000042577	batf3	20: 37812699 ~ 37813863 (-)
ENSDARG00000038225	nras	8: 11114754 ~ 11131695 (-)
ENSDARG00000076767	pgfb	17: 44697604 ~ 44752439 (+)
ENSDARG00000037677	fgf24	14: 5506983 ~ 5546497 (-)
ENSDARG00000088048	fgf18a	14: 2487672 ~ 2536342 (+)
ENSDARG00000053906	angpt2b	19: 35799384 ~ 35852390 (+)
ENSDARG00000036956	asxl1	23: 30730121 ~ 30752553 (+)
ENSDARG00000058961	ngfa	23: 4929442 ~ 4975517 (-)
ENSDARG00000089434	etv7	23: 5086317 ~ 5101847 (-)
ENSDARG00000078970	il7r	21: 22429509 ~ 22435957 (-)
ENSDARG00000042811	fgf1b	21: 44112914 ~ 44116241 (+)
ENSDARG00000056624	vegfd	11: 29889828 ~ 29916607 (-)
ENSDARG00000075343	csf1a	11: 23265157 ~ 23297192 (+)
ENSDARG00000014329	npm1a	10: 22034477 ~ 22045119 (+)
ENSDARG00000043962	fgf18b	10: 21471316 ~ 21484065 (-)
ENSDARG00000058503	flt3	24: 21691939 ~ 21713883 (-)
ENSDARG00000086778	pdgfba	22: 29312228 ~ 29336309 (-)
ENSDARG00000076510	fgf22	22: 19111444 ~ 19156332 (+)
ENSDARG00000070917	kitlga	25: 18118906 ~ 18140537 (-)
ENSDARG00000009351	fgf6a	25: 16945348 ~ 16951890 (+)

MARKER

The figure above shows the marker information in datasets of Danio rerio.
: marker.
: potential marker.
Click the legend to hide the icon of the cell type, which can be used in the case of overlapping icons.

EXPRESSION

Dataset ID	Tissue / Organ	Experiment type	Sample	Cell type	Marker class	Evidence
PRJNA668529 (3d)	olfactory rosette	disease	3mpf, intranasal 100ng r-Spike 3 days	Macrophages (cluster: 9)	potential marker	NA
PRJNA610520 (3.5dpf)	caudal hematopoietic tissue	baseline	3.5dpf, the mixture of same amount of kdrl:mCherry+ cells, CD41:GFP+ cells and double negative cells.
GSE144944 (fgfr3 +\|+)	cranial vault	baseline	1mpf, fgfr3 +/+
GSE144944 (fgfr3 -\|-)	cranial vault	growth	1mpf, fgfr3 -/-
GSE130526 (fin)	dorsal and anal fin	baseline	adult, fins were amputated from fish expressing both pnp4a:palmmCherry and tyrp1b:palmmCherry
GSE168695 (5dpf)	embryo	baseline	5dpf, GFP+ cells isolated from 5 dpf cldnb:lyn-EGFP embryos
PRJNA564810 (5dpf)	embryo	baseline	5dpf, a single-cell transcriptome atlas for zebrafish development
PRJNA564810 (1dpf)	embryo	baseline	1dpf, a single-cell transcriptome atlas for zebrafish development
GSE161712 (M. marinum)	granulomas	disease	adult, infected with bacteria of M. marinum
PRJNA608912 (wt_14dpi)	heart	regeneration	5mpf, wild type, 14 days post injury
PRJNA608912 (kit_2dpi)	heart	regeneration	5mpf, kit mutant, 2 days post injury
PRJNA608912 (kit_7dpi)	heart	regeneration	5mpf, kit mutant, 7 days post injury
PRJNA608912 (kit_14dpi)	heart	regeneration	5mpf, kit mutant, 14 days post injury
PRJNA415636 (heart, blood)	heart, blood	baseline	adult, Zebrabow M, heart and blood
PRJNA754013 (zebrafish)	hypothalamus	baseline	adult, male, female, untreatment
GSE150498 (nod2-\|-, 2X DSS+BZA)	intestine	disease	6dpf, nod2-/-, 2X DSS+BZA
GSE137784 (HCC, HepABC)	liver	disease	6mpf, male, isolated from the Tg(fabp10a:pt-B-cat)(HepABC) zebrafish with HCC
GSE137784 (no HCC)	liver	baseline	6mpf, male, isolated from the CreLox zebrafish with HCC
PRJNA668529 (3h)	olfactory rosette	disease	3mpf, intranasal 100ng r-Spike 3 hours
PRJNA668529 (control)	olfactory rosette	baseline	3mpf, intranasal PBS
PRJNA551501 (2mpf)	thyroid gland	baseline	2mpf, Tg(tg:mVenus-T2A-NTR)
PRJNA551501 (8mpf)	thyroid gland	baseline	8mpf, Tg(tg:mVenus-T2A-NTR)
GSE131136 (all)	trunk, skin	baseline	5dpf, sox10:CRE positive cells from 5dpf and post-embryonic zebrafish trunks with and without thyroid hormone
GSE176129 (pdgfrb-positive)	whole body	baseline	5dpf, FACS-isolated pdgfrb-positive cells
GSE158099 (WT)	whole body	baseline	2.5dpf, cd41:GFPlow-WT
GSE158099 (WT)	whole body	baseline	6dpf, cd41:GFPlow-WT
GSE158099 (WT)	whole body	baseline	10dpf, cd41:GFPlow-WT
GSE158099 (runx1 -\|-)	whole body	hematopoietic	10dpf, cd41:GFPlow-runx1-/-
GSE158099 (WT)	whole body	baseline	16dpf, cd41:GFPlow-WT
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-

After clicking the magnifying glass button, the clustering and expression information will be displayed below.

species	Danio rerio
tissue	pituitary
cell type	Erythroid cells
gene	ENSDARG00000077809 il13
project	GSE158142
dataset	GSE158142 (20hpf)

GENE ID: ENSDARG00000058503

MARKER

EXPRESSION

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences