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NOTE: search by id.

EXAMPLES:

species Danio rerio
tissue pituitary
cell type Erythroid cells
gene ENSDARG00000077809
il13
project GSE158142
dataset GSE158142 (20hpf)


  •  Japanese medaka
    (Oryzias latipes)
  •  mexican tetra
    (Astyanax mexicanus)
  •    
  •  Nile tilapia
    (Oreochromis niloticus)
  •  rainbow trout
    (Oncorhynchus mykiss)
  •  swamp eel
    (Monopterus albus)
  •  three-spined stickleback
    (Gasterosteus aculeatus)
  •  turquoise killifish
    (Nothobranchius furzeri)
  •  zebrafish
    (Danio rerio)
  •  zig-zag eel
    (Mastacembelus armatus)


  •  Japanese medaka
    (Oryzias latipes)
  •  mexican tetra
    (Astyanax mexicanus)
  •  Nile tilapia
    (Oreochromis niloticus)
  •  rainbow trout
    (Oncorhynchus mykiss)
  •  swamp eel
    (Monopterus albus)
  •  three-spined stickleback
    (Gasterosteus aculeatus)
  •  turquoise killifish
    (Nothobranchius furzeri)
  •  zebrafish
    (Danio rerio)
  •  zig-zag eel
    (Mastacembelus armatus)

CELL TYPE

  • The folded tree shows the cell types of the species covered by the FishSCT.
  • Click on the node of the fold tree to browse the details of the dataset with that cell type.
  • Check the dataset checkbox for dataset selection for multiple search and visualization.
  • If you only selects cell types and no genes, all marker genes of these cell types will be displayed.
  • Ciliated
    • Dataset ID Sample Tissue / Organ Experiment type Project ID Cell type Cluster
      PRJNA754013 (Choy surface) male, female, adult, untreatment hypothalamus baseline PRJNA754013 Ciliated 15
      PRJNA754013 (Molino cave) male, female, adult, untreatment hypothalamus baseline PRJNA754013 Ciliated 14
      PRJNA754013 (Pachon cave) male, female, adult, untreatment hypothalamus baseline PRJNA754013 Ciliated 14
      PRJNA754013 (Tinaja cave) male, female, adult, untreatment hypothalamus baseline PRJNA754013 Ciliated 19
      PRJNA754013 (Tinaja cave) male, female, adult, untreatment hypothalamus baseline PRJNA754013 Ciliated 22
  • Ependymal
    • Dataset ID Sample Tissue / Organ Experiment type Project ID Cell type Cluster
      PRJNA754013 (Molino cave) male, female, adult, untreatment hypothalamus baseline PRJNA754013 Ependymal 16
      PRJNA754013 (Pachon cave) male, female, adult, untreatment hypothalamus baseline PRJNA754013 Ependymal 19
      PRJNA754013 (Tinaja cave) male, female, adult, untreatment hypothalamus baseline PRJNA754013 Ependymal 21
  • Erythroid cells
    • Dataset ID Sample Tissue / Organ Experiment type Project ID Cell type Cluster
      PRJNA754013 (Choy surface) male, female, adult, untreatment hypothalamus baseline PRJNA754013 Erythroid cells 18
      PRJNA754013 (Molino cave) male, female, adult, untreatment hypothalamus baseline PRJNA754013 Erythroid cells 18
      PRJNA754013 (Pachon cave) male, female, adult, untreatment hypothalamus baseline PRJNA754013 Erythroid cells 20
      PRJNA754013 (Tinaja cave) male, female, adult, untreatment hypothalamus baseline PRJNA754013 Erythroid cells 17
  • Leukocytes
    • Dataset ID Sample Tissue / Organ Experiment type Project ID Cell type Cluster
      PRJNA754013 (Choy surface) male, female, adult, untreatment hypothalamus baseline PRJNA754013 Leukocytes 12
      PRJNA754013 (Choy surface) male, female, adult, untreatment hypothalamus baseline PRJNA754013 Leukocytes 17
      PRJNA754013 (Molino cave) male, female, adult, untreatment hypothalamus baseline PRJNA754013 Leukocytes 6
      PRJNA754013 (Pachon cave) male, female, adult, untreatment hypothalamus baseline PRJNA754013 Leukocytes 11
      PRJNA754013 (Tinaja cave) male, female, adult, untreatment hypothalamus baseline PRJNA754013 Leukocytes 16
  • Lymphocyte cells
    • Dataset ID Sample Tissue / Organ Experiment type Project ID Cell type Cluster
      PRJNA754013 (Choy surface) male, female, adult, untreatment hypothalamus baseline PRJNA754013 Lymphocyte cells 14
      PRJNA754013 (Molino cave) male, female, adult, untreatment hypothalamus baseline PRJNA754013 Lymphocyte cells 20
      PRJNA754013 (Pachon cave) male, female, adult, untreatment hypothalamus baseline PRJNA754013 Lymphocyte cells 17
  • Macrophages
    • Dataset ID Sample Tissue / Organ Experiment type Project ID Cell type Cluster
      PRJNA754013 (Choy surface) male, female, adult, untreatment hypothalamus baseline PRJNA754013 Macrophages 9
      PRJNA754013 (Molino cave) male, female, adult, untreatment hypothalamus baseline PRJNA754013 Macrophages 12
      PRJNA754013 (Pachon cave) male, female, adult, untreatment hypothalamus baseline PRJNA754013 Macrophages 12
      PRJNA754013 (Tinaja cave) male, female, adult, untreatment hypothalamus baseline PRJNA754013 Macrophages 7
  • Microglia
    • Dataset ID Sample Tissue / Organ Experiment type Project ID Cell type Cluster
      PRJNA754013 (Choy surface) male, female, adult, untreatment hypothalamus baseline PRJNA754013 Microglia 8
      PRJNA754013 (Molino cave) male, female, adult, untreatment hypothalamus baseline PRJNA754013 Microglia 8
      PRJNA754013 (Pachon cave) male, female, adult, untreatment hypothalamus baseline PRJNA754013 Microglia 7
      PRJNA754013 (Tinaja cave) male, female, adult, untreatment hypothalamus baseline PRJNA754013 Microglia 11
  • Neuron
    • Dataset ID Sample Tissue / Organ Experiment type Project ID Cell type Cluster
      PRJNA754013 (Choy surface) male, female, adult, untreatment hypothalamus baseline PRJNA754013 Neuron 1
      PRJNA754013 (Choy surface) male, female, adult, untreatment hypothalamus baseline PRJNA754013 Neuron 2
      PRJNA754013 (Choy surface) male, female, adult, untreatment hypothalamus baseline PRJNA754013 Neuron 3
      PRJNA754013 (Choy surface) male, female, adult, untreatment hypothalamus baseline PRJNA754013 Neuron 4
      PRJNA754013 (Choy surface) male, female, adult, untreatment hypothalamus baseline PRJNA754013 Neuron 6
      PRJNA754013 (Choy surface) male, female, adult, untreatment hypothalamus baseline PRJNA754013 Neuron 7
      PRJNA754013 (Choy surface) male, female, adult, untreatment hypothalamus baseline PRJNA754013 Neuron 10
      PRJNA754013 (Choy surface) male, female, adult, untreatment hypothalamus baseline PRJNA754013 Neuron 13
      PRJNA754013 (Choy surface) male, female, adult, untreatment hypothalamus baseline PRJNA754013 Neuron 16
      PRJNA754013 (Molino cave) male, female, adult, untreatment hypothalamus baseline PRJNA754013 Neuron 1
      PRJNA754013 (Molino cave) male, female, adult, untreatment hypothalamus baseline PRJNA754013 Neuron 2
      PRJNA754013 (Molino cave) male, female, adult, untreatment hypothalamus baseline PRJNA754013 Neuron 4
      PRJNA754013 (Molino cave) male, female, adult, untreatment hypothalamus baseline PRJNA754013 Neuron 5
      PRJNA754013 (Molino cave) male, female, adult, untreatment hypothalamus baseline PRJNA754013 Neuron 7
      PRJNA754013 (Molino cave) male, female, adult, untreatment hypothalamus baseline PRJNA754013 Neuron 9
      PRJNA754013 (Molino cave) male, female, adult, untreatment hypothalamus baseline PRJNA754013 Neuron 10
      PRJNA754013 (Molino cave) male, female, adult, untreatment hypothalamus baseline PRJNA754013 Neuron 11
      PRJNA754013 (Molino cave) male, female, adult, untreatment hypothalamus baseline PRJNA754013 Neuron 13
      PRJNA754013 (Pachon cave) male, female, adult, untreatment hypothalamus baseline PRJNA754013 Neuron 1
      PRJNA754013 (Pachon cave) male, female, adult, untreatment hypothalamus baseline PRJNA754013 Neuron 2
      PRJNA754013 (Pachon cave) male, female, adult, untreatment hypothalamus baseline PRJNA754013 Neuron 3
      PRJNA754013 (Pachon cave) male, female, adult, untreatment hypothalamus baseline PRJNA754013 Neuron 4
      PRJNA754013 (Pachon cave) male, female, adult, untreatment hypothalamus baseline PRJNA754013 Neuron 6
      PRJNA754013 (Pachon cave) male, female, adult, untreatment hypothalamus baseline PRJNA754013 Neuron 9
      PRJNA754013 (Pachon cave) male, female, adult, untreatment hypothalamus baseline PRJNA754013 Neuron 10
      PRJNA754013 (Pachon cave) male, female, adult, untreatment hypothalamus baseline PRJNA754013 Neuron 13
      PRJNA754013 (Pachon cave) male, female, adult, untreatment hypothalamus baseline PRJNA754013 Neuron 16
      PRJNA754013 (Tinaja cave) male, female, adult, untreatment hypothalamus baseline PRJNA754013 Neuron 1
      PRJNA754013 (Tinaja cave) male, female, adult, untreatment hypothalamus baseline PRJNA754013 Neuron 2
      PRJNA754013 (Tinaja cave) male, female, adult, untreatment hypothalamus baseline PRJNA754013 Neuron 4
      PRJNA754013 (Tinaja cave) male, female, adult, untreatment hypothalamus baseline PRJNA754013 Neuron 5
      PRJNA754013 (Tinaja cave) male, female, adult, untreatment hypothalamus baseline PRJNA754013 Neuron 6
      PRJNA754013 (Tinaja cave) male, female, adult, untreatment hypothalamus baseline PRJNA754013 Neuron 8
      PRJNA754013 (Tinaja cave) male, female, adult, untreatment hypothalamus baseline PRJNA754013 Neuron 9
      PRJNA754013 (Tinaja cave) male, female, adult, untreatment hypothalamus baseline PRJNA754013 Neuron 10
      PRJNA754013 (Tinaja cave) male, female, adult, untreatment hypothalamus baseline PRJNA754013 Neuron 12
      PRJNA754013 (Tinaja cave) male, female, adult, untreatment hypothalamus baseline PRJNA754013 Neuron 13
      PRJNA754013 (Tinaja cave) male, female, adult, untreatment hypothalamus baseline PRJNA754013 Neuron 14
      PRJNA754013 (Tinaja cave) male, female, adult, untreatment hypothalamus baseline PRJNA754013 Neuron 18
  • Oligodendrocyte precursor cells
    • Dataset ID Sample Tissue / Organ Experiment type Project ID Cell type Cluster
      PRJNA754013 (Molino cave) male, female, adult, untreatment hypothalamus baseline PRJNA754013 Oligodendrocyte precursor cells 19
      PRJNA754013 (Pachon cave) male, female, adult, untreatment hypothalamus baseline PRJNA754013 Oligodendrocyte precursor cells 18
      PRJNA754013 (Tinaja cave) male, female, adult, untreatment hypothalamus baseline PRJNA754013 Oligodendrocyte precursor cells 20
  • Oligodendrocytes
    • Dataset ID Sample Tissue / Organ Experiment type Project ID Cell type Cluster
      PRJNA754013 (Choy surface) male, female, adult, untreatment hypothalamus baseline PRJNA754013 Oligodendrocytes 11
      PRJNA754013 (Molino cave) male, female, adult, untreatment hypothalamus baseline PRJNA754013 Oligodendrocytes 15
      PRJNA754013 (Pachon cave) male, female, adult, untreatment hypothalamus baseline PRJNA754013 Oligodendrocytes 8
      PRJNA754013 (Tinaja cave) male, female, adult, untreatment hypothalamus baseline PRJNA754013 Oligodendrocytes 15
  • Progenitors
    • Dataset ID Sample Tissue / Organ Experiment type Project ID Cell type Cluster
      PRJNA754013 (Choy surface) male, female, adult, untreatment hypothalamus baseline PRJNA754013 Progenitors 5
      PRJNA754013 (Molino cave) male, female, adult, untreatment hypothalamus baseline PRJNA754013 Progenitors 3
      PRJNA754013 (Molino cave) male, female, adult, untreatment hypothalamus baseline PRJNA754013 Progenitors 17
      PRJNA754013 (Pachon cave) male, female, adult, untreatment hypothalamus baseline PRJNA754013 Progenitors 5
      PRJNA754013 (Pachon cave) male, female, adult, untreatment hypothalamus baseline PRJNA754013 Progenitors 15
      PRJNA754013 (Tinaja cave) male, female, adult, untreatment hypothalamus baseline PRJNA754013 Progenitors 3

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  • IDs are separated by  / .

Gene

  • Please fill in the gene ID in FishSCT for multiple search and visualization.
  • If you have symbol, you can quickly search for its ID in FishSCT.
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  • If you only selects genes and no cell types, all marker information of these genes will be displayed.

  • Click the arrow to add the gene you choose.
  • Support manual input.
  • Support genes without symbol.
  • IDs are separated by space.


      

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