CI01000057_05119106_05161147 (ATP2B2)


Basic Information

Item Value
gene id CI01000057_05119106_05161147
gene name ATP2B2
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000057
NCBI id null
chromosome length 6014843
location 5118994 ~ 5162116 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000057_05119106_05161147.mRNA
TTATAAAAAAAAACTTAATGTAGTCAACTAAGGTCTGTAGCTTAATTACTTTCTAAGTAGCTTCCCCCACATGGTTATGTCATAAACATTAATATGCAAATTGCACGTTAATATGCGTATTTCACCTGCAGTGGACTTTCTAACAGTGCAGAGGCAGAGAAAAGAGTCTCGACACTTCGGCTCCACCGGCGTCCACCCTGCCATTACATCTGAGATTTGTGACACTTCTTCTTGTTTTAATGGAGAATGGTGCTGTCTGTGTCTCTTAAGGAAGATGAATTGCGCCGCTGCCTGCGGGACAGCGAATGCGGGTGCGGAGGACGAAGGGGAAGCAGAGGCCGGTTGGATCGAGGGGGCTGCCATCTTACTCTCAGTGGTCTGTGTTGTTCTGGTCACGGCCTTCAACGACTGGAGCAAAGAGAAACAGTTCAGGGGTTTACAGAGCCGCATCGAACAGGAGCAGAAATTCCAGGTGGTGCGTGGAGGACAGGTCATCCAGCTCCCTGTGTCAGATATTGTCGTTGGCGATATTGCACAAATCAAGTATGGTGACCTGCTCCCAGCTGACGGGGTCTTGATACAAGGCAACGATCTGAAGATTGATGAGAGTTCTCTGACGGGAGAATCCGACCACGTGCGCAAATCTGCAGATAAAGACCCCATGCTTCTCTCTGGCACCCATGTGATGGAGGGCTCGGGTCGGATGGTGGTCATGGCTGTCGGGGTGAACTCTCAGACCGGGATCATCTTCACTTTGCTCGGTGCTGGTGGAGAGGAGGAGGAGAAAAAAGAGAAGAAAGGTCAGGCTCTGGAGGACGGCCATCACCTGGCAGGTAAAATGCAGGATGGAAATATGGAGAACAACCAGACCAAAGTGAAAAAGCAGGATGGTGCTGCGGCAATGGAGATGCAGCCCTTGAAGAGCGCGGAGGGTGGAGAAACCGATGACAAAGAGAAGAAGAAGGCCAATGTCTCCAAGAAAGAGAAGTCCGTTCTGCAAGGAAAACTGACAAAGCTGGCTGTGCAAATCGGCAAAGCAGGTTTGGTGATGTCTGCCATTACAGTCATCATCCTGGTGCTTTACTTTGCGATCGATAACTTTGTGCTTCAGAAGAGGCCGTGGCTGCCGGAGTGCACTCCGGTCTACATTCAGTATTTTGTCAAATTCTTCATCATTGGTGTTACAGTCCTGGTGGTGGCTGTTCCTGAAGGCCTTCCGCTGGCTGTTACCATCTCTCTGGCCTACTCTGTGAAGAAAATGATGAAGGATAACAATTTGGTGCGCCATCTGGACGCTTGTGAGACCATGGGCAATGCCACAGCTATCTGCTCAGACAAGACTGGGACGCTGACCACCAACCGAATGACAGCAGTGGAGTGCTTTGTGGCTGATGTCCATTACAAGGAGATACCAGATCCCAGCTCCATCCCCGCCAAAACTCTGGAAACACTGGTCAACGCTATATCCCTCAACAGCGCCTACACTACTAAAATACTGGACTGTTCTGTAGGTCACCGGCTGCGGTGTGTTTTTGTAAACTCTGGATTCTTACTTACACCGAAGACAGATGCAGTTGGCCCTTCTTGCATCTTTTTCAAAGGTGTGTTTGAGCACAAAGTATCAGTTAGGGGTTTACATGTTGTTGCATGTGTTTTATTCATGCTCGATGTGTTTTGGCTTCTTCCTGGGAATCTGGGAACAGGTCCATTACCTTTAACAAAATGTTGTGACTCATTTTGGGCAAAGTCGTTTGTCCGGCTGCAGCCGCTCCATGTGGCTCAGGGACTCTGCCAAAGCCTCTCTGCGATGCCTCGGCCTGCCACTCATTTATTTAAGCCAATCAGCTTTGGCAAAGCACTCCCCTCACGGCCTGAGGCAGGGGCTGTCACTGTCAGTGCAGATAAGGATGGAGGTCTTCCCAAACAAGTGGGCAACAAAACCGAGTGTGGCCTGCTGGGACTGGTCCTTGACCTGAAACGAGACTACCAGACCGTTCGGAACCAGATCCCAGAGGAGAAACTCTACAAGGTGTACACGTTCAACTCTGTGAGGAAGTCAATGAGCACCGTCATCAAGCTTCCAGACGGCAACTTCAGAATGTACAGCAAAGGAGCGTCAGAAATCGTCCTTAAAAAGTGTTCTTACATTCTGAACGAGGTGGGCGAACCTCGCGTTTTCAGGCCGAGGGACAGGGACGAGATGGTGAAGAAAGTGATCGAACCCATGGCCTGCAGCGGACTCAGAACCATCTGTGTGGCCTACCGGGACTTTTCCGGAAACCCTGAGCCCAACTGGGATGACGAAAACAACATCTTGACCGAGCTGACCGCAATATGTGTTGTTGGAATTGAGGATCCTGTCAGACCCGAGGTGCCCGACGCCATCCTGAAATGCCAGCGTGCTGGAATCACTGTGCGTATGGTGACAGGAGACAACATCAACACGGCACGAGCTATCGCTATTAAATGTGGCATCATCCAGCCCGGAGAAGACTTCCTGTGCATCGACGGGAAAGAGTTCAACAGGAGGATCAGAAATGAGAAGGGAGAGGTTGAGCAGGAGCGCATTGATAAAGTCTGGCCTAAACTGCGAGTGCTTGCCAGATCCTCCCCGACGGACAAACACACACTGGTCAAAGGTATTATTGACAGCACTCTGGTGGACCAGCGGCAGGTGGTTGCTGTAACCGGCGATGGAACCAATGACGGTCCGGCCCTTAAGAAGGCAGATGTCGGTTTTGCCATGGGAATCGCAGGGACAGATGTGGCCAAAGAGGCGTCTGACATCATCCTGACAGATGACAACTTCTCCAGCATCGTGAAAGCCGTGATGTGGGGACGCAACGTCTACGACAGCATCTCAAAGTTCCTCCAGTTCCAGCTGACCGTTAACGTGGTGGCCGTGATCGTTGCCTTTACCGGAGCCTGTATCACACAGGATTCTCCTCTTAAAGCAGTGCAGATGTTGTGGGTAAACCTGATCATGGACACGTTTGCATCTTTGGCTTTGGCCACCGAACCGCCCACTGAGTCTCTGTTGATGAGGAAACCCTACGGCCGAAACAAACCCCTGATCTCCAGCACCATGACCAAGAACATCCTGGGCCACGGCGTGTACCAGCTCATCATCATCTTCACGCTGCTGTTTGCGGGCGAGCAGATCTTTGACATCGACAGCGGCAGGAACGCGCCGCTGCATTCTCCCCCGTCTGAGCACTACACCATTATCTTCAACACCTTCGTCATGATGCAGCTCTTCAACGAGATCAACGCCCGCAAGATCCACGGGGAGAGAAACGTGTTTGAAGGCATTTTCAGAAATCCCATCTTCTGCTCCATTGTCCTGGGCACTTTCGCCATTCAGATTGTGATTGTTCAGTTTGGAGGAAAGCCATTCAGCTGTTCTCCTCTGGACCTGGAGAAGTGGATGTGGTGTGTGTTCCTGGGGCTGGGAGAGCTGGTCTGGGGACAGGTTATATCAACAATCCCAAACAGCAAGCTGAGGTTCCTCAGAGGGGCTGGTCGGCTGACGCAAAAGGATGAAATGACGGCCGAGGAGGAGATGAACGAGGACCAGGAGGAGATCGATCACGCGGAGAGAGAGTTGCGGCGAGGGCAGATCCTCTGGTTCAGAGGCCTCAACAGAATCCAGACTCAGGTTAGAAACGTGAAAAGTTACGACTGCCTGAAATATTCAGCATGAATTGTGCACTGAAATGGCATCTGTAGGAAGTAGCCATACTTATGCTTGTACATCAATTGTGTTTGTAATTATGTACTTGAGATTGGACCATCTGCACGGCTGGCAGTGTGTTTTACAGCCGGATTTAGAACAGTGCGGAGGTTGAACCGCAGCTCAGCTCTGCCAAACGGCATTACTGGCACAAACATCAGCGCTGATCGCAAGACTTTTGTACTGTTGCATTAATCATGTGCTGTCGGAACACCTTTCATGAAAAACACTCTCATTTTCCAACCGAATAGTCATTTATTGAATAGTGTCCCACAGTATTAGATCTAAATAGCAGTGAAAATCTCAATCTAAAAATATTTTATCTTACCTAACATCTGCCAGTTAGAAATACTTTTTCATTTAATGAATATTCATGAGCAAAGCCAATATGTTTATTTTGCCCCCTCCTCCCACTCAAGTCATTCCCACGCCCCTGATAATATTGATTTTCTCACAAGAATGTACTCAGCGCTTCTATAAAGTTTGAAAGTCTAAAATGGTTTCATTGAGCAATATCACACTCACAAGTGGGCTGTCGTTCTGAATAACATCACAAGACTGATATTCAAACCAGCAGCACCATTAAGAGTGTCATGTTGCTTTTATACAACAGTTCAATAAACCACAAGCTTGAGACAAAAGCATCATGTCATCAAGCGTACACGAGTGGAGCGGACCATTCCTGGGTCATTCCTACAGTTTGGTGGATTTTGTGTCCTTATGAAACAGTACTGCATATTTTACATTAAATGTTACTTTAGTGCCACATGGTTTTCCGTGCATACGCCAACTAACACAAATTCATAATGATTAGTACCTAAGCAAAAAAAAAAAAAAAAAGCACTTTACAGGTTACATGTATGTTTCTAAATTAGCAATTTTGAGTATTAGTACATACATTTACTTACTTAGACATTATTGTGATATATTTTTTAATGA

Function

symbol description
atp2b2 Predicted to enable P-type calcium transporter activity and PDZ domain binding activity. Predicted to be involved in regulation of cytosolic calcium ion concentration. Predicted to act upstream of or within neuron differentiation. Predicted to be located in cytoplasm. Predicted to be active in intracellular membrane-bounded organelle and postsynaptic density membrane. Predicted to be integral component of plasma membrane. Is expressed in several structures, including blood; eye; heart; liver; and pleuroperitoneal region. Human ortholog(s) of this gene implicated in autosomal recessive nonsyndromic deafness 12. Orthologous to human ATP2B2 (ATPase plasma membrane Ca2+ transporting 2).

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K05850 ATP2B; P-type Ca2+ transporter type 2B

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000057_05119106_05161147.mRNA True 4672 mRNA 0.48 21 5118994 5162116

Neighbor

gene id symbol gene type direction distance location
CI01000057_05089046_05116009 NA coding upstream 2920 5088259 ~ 5116074 (+)
CI01000057_04949557_05007535 IARS coding upstream 110822 4949557 ~ 5008172 (+)
CI01000057_04842021_04842320 NA coding upstream 276662 4841301 ~ 4842332 (+)
CI01000057_04781699_04785615 NA coding upstream 333343 4781699 ~ 4785651 (+)
CI01000057_04773601_04773990 NA coding upstream 345004 4773396 ~ 4773990 (+)
CI01000057_05190329_05218573 SLC6A11 coding downstream 28043 5190159 ~ 5218846 (+)
CI01000057_05263212_05269456 SLC6A1B, SLC6A1, SLC6A1A coding downstream 99755 5261871 ~ 5269510 (+)
CI01000057_05291346_05295377 NA coding downstream 127318 5289434 ~ 5295729 (+)
CI01000057_05349185_05350825 HRH1 coding downstream 186100 5348216 ~ 5351058 (+)
CI01000057_05357955_05399136 ATG7 coding downstream 194791 5356907 ~ 5399252 (+)
G245711 NA non-coding upstream 181836 4936665 ~ 4937158 (+)
G245715 NA non-coding upstream 182851 4935757 ~ 4936143 (+)
G245706 NA non-coding upstream 187819 4930829 ~ 4931175 (+)
G245705 NA non-coding upstream 191467 4925812 ~ 4927527 (+)
G245695 NA non-coding upstream 200286 4916751 ~ 4918708 (+)
G245804 NA non-coding downstream 135737 5297853 ~ 5298085 (+)
G245805 NA non-coding downstream 142619 5304735 ~ 5305047 (+)
G245730 NA non-coding downstream 294873 5456989 ~ 5467116 (+)
G245829 NA non-coding downstream 312890 5475006 ~ 5475281 (+)
G245830 NA non-coding downstream 313697 5475813 ~ 5476015 (+)
G245725 NA other upstream 15388 5098685 ~ 5103606 (+)
G245486 NA other upstream 906913 4209897 ~ 4212081 (+)
CI01000057_03842028_03844033 NDUFS7.S, MGC85267, NDUFS7 other upstream 1274303 3842028 ~ 3844691 (+)
G245401 NA other upstream 1580552 3537569 ~ 3538442 (+)
G245231 NA other upstream 1826432 3087096 ~ 3292562 (+)
CI01000057_05564489_05579041 NA other downstream 411788 5564489 ~ 5579843 (+)
G245856 NA other downstream 475538 5637654 ~ 5643340 (+)
G245857 NA other downstream 493160 5655276 ~ 5657239 (+)
CI01000057_05912175_05916639 NA other downstream 749697 5911767 ~ 5917211 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_003808 atp2b2 coding NC_007122.7 CM002895.2 1148701 ~ 1291012 (-)
bowfin (Amia calva) AMCG00017193 atp2b2 coding CM030122.1 CM030122.1 50045218 ~ 50061365 (+)