G245483


Basic Information

Item Value
gene id G245483
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000057
NCBI id null
chromosome length 6014843
location 4699504 ~ 4702148 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU278660
AGTCATTTCTCCTCGCGTTCACAGAATCGCTGCTGCTCTTCATCACAGTAACAGGAACATGATCTACAAAGTCTGACAAACAGAAAGGCGAGACATTTTGAAACCTAACAAACTTCTAATTAATTGTTTAAATGAATAGATAATGATTTTGACATTAATTACATGTTGCTGTTGTGAGTAATGAGAGTGGAGTCAATAACTTTATCCCTTAAAACTCATCTTTGATCACCAATATGACATATTTAAACTTTTTGTTCCTGTGAAAAAATTTATTTATGCCTTAAAATAGCTTGAACGTAACTCTACACCCTTGCTTCATTTAGTATGTGTTGATACATGAATATGCAAATTAGCCCCGCCTCCACTCGCTCACACCAGCTCAGATCCACTCCACTGTCTTTTTTTTCTGCAGTTTTAAAGAGAAAATACTCATCGATGGTGTTGACTTGTGTATTTGCACATGGTTTGTCTTAAAGCATTTTAAAAACACTACATATAAACAACATTAAACGAATCAGAACCATCTTCTAAAAGAGAAGTTGCTCAGCTGACAGTGGGTTTATAGATTGAGAAAGAAGAAACAAAACAAAACTGGTCTTCAGGTGGACACTGACTGTTTTCATTCTGGTCTTTTCTTGGGTCAGCCTTTGACCTGCTCTCCACATAACTTCACCTGTCACCTGACTCCTATACATAGAGAGGAAAGCCTATGGTTTGACCTGTGTTCAAGTACTTTCATGGAGTAAAAGACAATGCTGATATTGATGTGAAGAGTGACATCAGAATGATCTTCATTGCATCTTTGCTCTTGTATTGTATTACTGTATTACTAACATCTGAGAGCTTTCTGGCCCTCTGTTGACAGTCCACGCAACTACCACTTTGACGCTTCAAAAAGTTCATTAAAAGATCGTAAAACGAATCCATATGAGCGGTTTAGTCCAAATTTTCTGAAGAGACACAATCTTGCGGAAGCTCAAACGTGCTGCGTAACACGAGAATGAACCTCATTGGCTCTTGTACGTCAAGTATATATTTGGATAAAAACCTAAATTCAATTTGTTCATCATATAAAGCGATCGAGTCTCTTAAGAAAATTTGGACTAAACCGCTCGATTCATATGGATTAGTTTTGCGATCTATTTATGAACTATTTGAAGCGTCAAAGTGGTAGTTGCGTATGGAGGGACAGAAATCTCTCAGATTTCATCAAAAAGATCTTCATTTAAGTCTTACAGGGTTGGAACGACATGAGGGTGAGTAAATAATGACAGGATTTTCATTTTTGGTTGAATAAGTTTGGATATGTGAGTGTTTTCATTCCTCCTTTTGCATTAAATTAAAATTCAAATCTGCATTATAAAGCCCTAAATGGTCACGGTAGAATCCGTCCATTAAAGTCACAAAAGGCCAGCCAACTGATGAACCAAGAGAATCGCATTAGGATAGCCTTCCTGGCAGTGTTTGAGACTCAGACTCGGCTTATGCCAAAACATTTATCTAACCTTGTAGTTACGCTGCATCAGTCACGACTGCCGGGATCAAAACCAATTCTCAGGATTTCTGCGCTATAAAAAATGAGCATTATTCTGCTAACATTACTGCACTGATTCTCCTTATTTCCACATGGGATACTAGAAGTCTTATCAGCTCCTGCTCCAAACTACAACTGTTGACCTGACAGACAGAAATCATTACAGTCGTAGGACAGAACTCAACATCACTGACCACTGCCCAAAATCTAATAATTATCCAATAGCTTAATTTGTTCAATGAGCACATGACTTCTTGTATTACACATGCAGTGTAACTAGATAAAATCTAGCATATGTGCATTTGTAAATCAATACAGCTGACATGACTGACATTCACTGTGATTATCTAGAGTAATTGAGACTGTTAATGTGGTCAGCAAAACTGAAGATCCTTCTATTATCTATTGAATCACACAATAATATTTAAAATATCAGTAAGCTTAATATACATAAAATCATCATTTATTGGATTACTTTCAATTGAGGTGTCCCAAACCCTAACCTCTAAATTTCAACTTGTGAAAATATTGAAATATTTTTTTTTTTCCATTGCTGTTTTTAAAAATATATATTAAAAAAAAAAAGTGAAGTTAAAAAAAATATTTATTTTACATTTCTATTTTTAAATCATGAAACTTTATGTAAAAAAAAATGTGTCCCGCATTTTCATGTCACTACCGAAACAGTGTATGTTTTAGTCCATTGTCTGAGACTGATTTTAACACACTTCTGCATTTCTGATCAGGAAATATTCCTGTGTCCCTCCCTCTCATCGCCTCTCTTTCACAGTAGATAGGTCCATCATTCTGAGTTAAATGTGTTCAAAAATCTGAGAATCTGTGTGGAACTTTAAGGAACGTCACTACCAAACACCTTTTTCTGCAATTAAGCAAACTTTTTTGGGTGTTATTCCATAAAATTTTGTTTTTCTGTGTGTACAACTGTTCAGAACTGTGCTAGCTAACCATGTGCTGATTAGCATCTTTGAACGGCTCAAAAGAGTCTAATATTGTCACTACCGACACGACCACATGTTTCGGTTGTGACTGTTTCGGTAGTGACATCATTGTTTTAGTAGTGACAAAAGGGAACACAATCATTTATTTGAGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU278660 True 2645 lncRNA 0.36 1 4699504 4702148

Neighbor

gene id symbol gene type direction distance location
CI01000057_04684204_04698051 METTL1, METTL1-B coding upstream 1453 4684204 ~ 4698051 (+)
CI01000057_04644947_04646881 NA coding upstream 52491 4644947 ~ 4647013 (+)
CI01000057_04612115_04631293 RAF1, RAF1B coding upstream 67633 4611854 ~ 4631871 (+)
CI01000057_04601541_04604168 NA coding upstream 95085 4601170 ~ 4604419 (+)
CI01000057_04547933_04555967 RAB43 coding upstream 143516 4547757 ~ 4555988 (+)
CI01000057_04703416_04711776 CYP27B1 coding downstream 1205 4703353 ~ 4711933 (+)
CI01000057_04737652_04740503 METTL21B coding downstream 35504 4737652 ~ 4740981 (+)
CI01000057_04755505_04764341 NA coding downstream 53357 4755505 ~ 4764412 (+)
CI01000057_04773601_04773990 NA coding downstream 71248 4773396 ~ 4773990 (+)
CI01000057_04781699_04785615 NA coding downstream 79551 4781699 ~ 4785651 (+)
G245654 NA non-coding upstream 44153 4654840 ~ 4655351 (+)
G245653 NA non-coding upstream 45485 4653783 ~ 4654019 (+)
G245652 NA non-coding upstream 45858 4653407 ~ 4653646 (+)
G245644 NA non-coding upstream 101093 4597952 ~ 4598411 (+)
G245464 NA non-coding upstream 116242 4580465 ~ 4583262 (+)
G245671 NA non-coding downstream 47659 4749807 ~ 4750059 (+)
G245678 NA non-coding downstream 78270 4780418 ~ 4781001 (+)
G245681 NA non-coding downstream 90841 4792989 ~ 4794717 (+)
G245703 NA non-coding downstream 201145 4903293 ~ 4910879 (+)
G245692 NA non-coding downstream 210588 4912736 ~ 4916645 (+)
G245486 NA other upstream 487423 4209897 ~ 4212081 (+)
CI01000057_03842028_03844033 NDUFS7.S, MGC85267, NDUFS7 other upstream 854813 3842028 ~ 3844691 (+)
G245401 NA other upstream 1161062 3537569 ~ 3538442 (+)
G245231 NA other upstream 1406942 3087096 ~ 3292562 (+)
G243991 NA other upstream 2046944 2635237 ~ 2652560 (+)
G245725 NA other downstream 396537 5098685 ~ 5103606 (+)
CI01000057_05564489_05579041 NA other downstream 871756 5564489 ~ 5579843 (+)
G245856 NA other downstream 935506 5637654 ~ 5643340 (+)
G245857 NA other downstream 953128 5655276 ~ 5657239 (+)
CI01000057_05912175_05916639 NA other downstream 1209665 5911767 ~ 5917211 (+)

Expression


Co-expression Network