Gene
RNA
| Item | Value |
|---|---|
| gene id | G245681 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000057 |
| NCBI id | null |
| chromosome length | 6014843 |
| location | 4792989 ~ 4794717 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU278882 | True | 1729 | lncRNA | 0.37 | 1 | 4792989 | 4794717 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000057_04781699_04785615 | NA | coding | upstream | 7338 | 4781699 ~ 4785651 (+) |
| CI01000057_04773601_04773990 | NA | coding | upstream | 18999 | 4773396 ~ 4773990 (+) |
| CI01000057_04755505_04764341 | NA | coding | upstream | 28577 | 4755505 ~ 4764412 (+) |
| CI01000057_04737652_04740503 | METTL21B | coding | upstream | 52008 | 4737652 ~ 4740981 (+) |
| CI01000057_04703416_04711776 | CYP27B1 | coding | upstream | 81056 | 4703353 ~ 4711933 (+) |
| CI01000057_04842021_04842320 | NA | coding | downstream | 46584 | 4841301 ~ 4842332 (+) |
| CI01000057_04949557_05007535 | IARS | coding | downstream | 154840 | 4949557 ~ 5008172 (+) |
| CI01000057_05089046_05116009 | NA | coding | downstream | 293542 | 5088259 ~ 5116074 (+) |
| CI01000057_05119106_05161147 | ATP2B2 | coding | downstream | 324277 | 5118994 ~ 5162116 (+) |
| CI01000057_05190329_05218573 | SLC6A11 | coding | downstream | 395442 | 5190159 ~ 5218846 (+) |
| G245678 | NA | non-coding | upstream | 11988 | 4780418 ~ 4781001 (+) |
| G245671 | NA | non-coding | upstream | 42930 | 4749807 ~ 4750059 (+) |
| G245483 | NA | non-coding | upstream | 90841 | 4699504 ~ 4702148 (+) |
| G245654 | NA | non-coding | upstream | 137638 | 4654840 ~ 4655351 (+) |
| G245653 | NA | non-coding | upstream | 138970 | 4653783 ~ 4654019 (+) |
| G245703 | NA | non-coding | downstream | 108576 | 4903293 ~ 4910879 (+) |
| G245692 | NA | non-coding | downstream | 118019 | 4912736 ~ 4916645 (+) |
| G245695 | NA | non-coding | downstream | 122034 | 4916751 ~ 4918708 (+) |
| G245705 | NA | non-coding | downstream | 131095 | 4925812 ~ 4927527 (+) |
| G245706 | NA | non-coding | downstream | 136112 | 4930829 ~ 4931175 (+) |
| G245486 | NA | other | upstream | 580908 | 4209897 ~ 4212081 (+) |
| CI01000057_03842028_03844033 | NDUFS7.S, MGC85267, NDUFS7 | other | upstream | 948298 | 3842028 ~ 3844691 (+) |
| G245401 | NA | other | upstream | 1254547 | 3537569 ~ 3538442 (+) |
| G245231 | NA | other | upstream | 1500427 | 3087096 ~ 3292562 (+) |
| G243991 | NA | other | upstream | 2140429 | 2635237 ~ 2652560 (+) |
| G245725 | NA | other | downstream | 303968 | 5098685 ~ 5103606 (+) |
| CI01000057_05564489_05579041 | NA | other | downstream | 779187 | 5564489 ~ 5579843 (+) |
| G245856 | NA | other | downstream | 842937 | 5637654 ~ 5643340 (+) |
| G245857 | NA | other | downstream | 860559 | 5655276 ~ 5657239 (+) |
| CI01000057_05912175_05916639 | NA | other | downstream | 1117096 | 5911767 ~ 5917211 (+) |
