Gene
RNA
| Item | Value |
|---|---|
| gene id | G407562 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000299 |
| NCBI id | null |
| chromosome length | 6567443 |
| location | 4939691 ~ 4939939 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU468295 | True | 249 | lncRNA | 0.34 | 1 | 4939691 | 4939939 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000299_04913779_04927715 | NA | coding | downstream | 11976 | 4913373 ~ 4927715 (-) |
| CI01000299_04861862_04862244 | NA | coding | downstream | 77098 | 4861577 ~ 4862593 (-) |
| CI01000299_04741460_04746667 | NA | coding | downstream | 193024 | 4741447 ~ 4746667 (-) |
| CI01000299_04708767_04714088 | RCAN1B | coding | downstream | 225603 | 4708503 ~ 4714088 (-) |
| CI01000299_04658984_04668843 | ATP1A1A.4, ATP1A1 | coding | downstream | 270669 | 4658895 ~ 4669022 (-) |
| CI01000299_05379545_05381902 | NA | coding | upstream | 439210 | 5379149 ~ 5382140 (-) |
| CI01000299_05419449_05423414 | ATP5J | coding | upstream | 479464 | 5419403 ~ 5423414 (-) |
| CI01000299_05428160_05443433 | APP, APPA | coding | upstream | 487722 | 5427661 ~ 5443433 (-) |
| CI01000299_05457285_05462908 | NA | coding | upstream | 517168 | 5456864 ~ 5463491 (-) |
| CI01000299_05466693_05471714 | ADAMTS1 | coding | upstream | 525703 | 5465642 ~ 5471987 (-) |
| G407526 | NA | non-coding | downstream | 116140 | 4822041 ~ 4823551 (-) |
| G407475 | NA | non-coding | downstream | 234890 | 4704124 ~ 4704801 (-) |
| G407477 | NA | non-coding | downstream | 261463 | 4678018 ~ 4678228 (-) |
| G407476 | NA | non-coding | downstream | 262245 | 4677110 ~ 4677446 (-) |
| G407467 | NA | non-coding | downstream | 302266 | 4636610 ~ 4637425 (-) |
| G407564 | NA | non-coding | upstream | 16159 | 4956098 ~ 4956365 (-) |
| G407565 | NA | non-coding | upstream | 18048 | 4957987 ~ 4996909 (-) |
| G407591 | NA | non-coding | upstream | 145455 | 5085394 ~ 5182362 (-) |
| G407669 | NA | non-coding | upstream | 473395 | 5413334 ~ 5418371 (-) |
| G407413 | NA | other | downstream | 388970 | 4475994 ~ 4550721 (-) |
| G405053 | NA | other | downstream | 2921641 | 2017687 ~ 2018050 (-) |
| G404976 | NA | other | downstream | 3058703 | 1855639 ~ 1880988 (-) |
| G407805 | NA | other | upstream | 887897 | 5835889 ~ 5835989 (-) |
| CI01000299_06526127_06532048 | CEP97 | other | upstream | 1592062 | 6526127 ~ 6532048 (-) |
