Gene
RNA
| Item | Value |
|---|---|
| gene id | G407669 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000299 |
| NCBI id | null |
| chromosome length | 6567443 |
| location | 5413334 ~ 5418371 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU468426 | True | 1242 | lncRNA | 0.57 | 6 | 5413334 | 5418371 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000299_05379545_05381902 | NA | coding | downstream | 31194 | 5379149 ~ 5382140 (-) |
| CI01000299_04913779_04927715 | NA | coding | downstream | 485619 | 4913373 ~ 4927715 (-) |
| CI01000299_04861862_04862244 | NA | coding | downstream | 550741 | 4861577 ~ 4862593 (-) |
| CI01000299_04741460_04746667 | NA | coding | downstream | 666667 | 4741447 ~ 4746667 (-) |
| CI01000299_04708767_04714088 | RCAN1B | coding | downstream | 699246 | 4708503 ~ 4714088 (-) |
| CI01000299_05419449_05423414 | ATP5J | coding | upstream | 1032 | 5419403 ~ 5423414 (-) |
| CI01000299_05428160_05443433 | APP, APPA | coding | upstream | 9290 | 5427661 ~ 5443433 (-) |
| CI01000299_05457285_05462908 | NA | coding | upstream | 38736 | 5456864 ~ 5463491 (-) |
| CI01000299_05466693_05471714 | ADAMTS1 | coding | upstream | 47271 | 5465642 ~ 5471987 (-) |
| CI01000299_05478688_05502027 | ADAMTS5 | coding | upstream | 59111 | 5477482 ~ 5503268 (-) |
| G407591 | NA | non-coding | downstream | 230972 | 5085394 ~ 5182362 (-) |
| G407565 | NA | non-coding | downstream | 416425 | 4957987 ~ 4996909 (-) |
| G407564 | NA | non-coding | downstream | 456969 | 4956098 ~ 4956365 (-) |
| G407562 | NA | non-coding | downstream | 473395 | 4939691 ~ 4939939 (-) |
| G407526 | NA | non-coding | downstream | 589783 | 4822041 ~ 4823551 (-) |
| G407734 | NA | non-coding | upstream | 134257 | 5552628 ~ 5554845 (-) |
| G407764 | NA | non-coding | upstream | 216469 | 5634840 ~ 5639866 (-) |
| G407848 | NA | non-coding | upstream | 355878 | 5774249 ~ 5775541 (-) |
| CI01000299_05896205_05898855 | NA | non-coding | upstream | 403204 | 5896043 ~ 5898857 (-) |
| G407413 | NA | other | downstream | 862613 | 4475994 ~ 4550721 (-) |
| G405053 | NA | other | downstream | 3395284 | 2017687 ~ 2018050 (-) |
| G404976 | NA | other | downstream | 3532346 | 1855639 ~ 1880988 (-) |
| G407805 | NA | other | upstream | 409465 | 5835889 ~ 5835989 (-) |
| CI01000299_06526127_06532048 | CEP97 | other | upstream | 1113630 | 6526127 ~ 6532048 (-) |
