G678639


Basic Information

Item Value
gene id G678639
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01180000
NCBI id null
chromosome length 11503085
location 902610 ~ 907382 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU799298
TGGGAAAATATCGGTAAATCGATATATCGGTCGATCTCTAGTGCAAATTCAGCATTGAATTGACCCTCGTTTGTGAAGCAGTCCGGCATAAAATGACGGCATGACAACAACACTTTACTACAACAACTCTTCCTCTTCTCTAAAGCAGCCCAACATGGCCTCGCCCCCTTTGTTGCGTGTTCTCGGGGGCGGGGTTTATGTAAATTTTAGGGTTTGTGATGTCACTAACCTGGGAAGAAGCACGTTGTAGTCCCTACCAGCCGTTTATTGTAGTTCTTAAAAAGCGATTTCTGTAAGAAAATATCTCTCTTTGCATTGAACTTTGAGCATCGTAACTTTGCAGATGTTATTTATGTTCAAACAGCAACATTACACACTAACTAAAGTTAAAAAAGTGAAATCATAATCAAGGACCCCTTTAAGAATATTGACATTGATTGACTATGACATCAGTCAATGTGTGTATTAATTAGTCTCATCATAGACTGTTAAATCAAGTTTCTGTTTAAAGAGAGTTAGAATTGAAGAACTTGCCAAGGTTGACACTGTGAATTCTTGAGCTGAATGAATTCTGAATCTGAATAATGGCACTATTGTTTATTTGTGAAGTCTTTTTTTAAAATTGATGCAATGTTATCGATTACATTTTTTCCACAGTAACACTGTTATTTTCATTTTATTGCTATAAAGCTGCCTTGAAACAATCTGTATTGTAAAATGTGCTCTCTATAAATAAATGTGACTTGACTAGTTTAGGTAAATTGTGTATTTTCATTGGGTATGTTATTGGCGTGTTTAAGTTTTCCTCTTTGTTGCCTTATGGGAGAAACGAGAAGTTCGTCTTCCCATCGCTGGGCTTAGATGGCACATTGACTGCAGAAGGATGTTTATCTTGCGTTGCACTCTTTCATAACATAATGACAGGAAATTAAAGCTCATTTTGGAGACTCCTCTTGAAAATAACATCTGTCAGGACAGGTGGACAGCTGCTCGCTACCCTCACGTCAAGCAGGAACGTTTTGTTTAATGTGAATCAAGTTAACACTATTTAGTATGCTTTATGATGGGTTATGTGCATTGTTTTAGTGTGGCGGAAATGTGTTTCAGTCTAGTATTGAATACAAGATAGCGTTTCTCAAACATACGAATCTTAGTCGTGCTTCTAATCCACTGGATAAAGGATGAGAATATCTTGAGATGTGGCAATCAGGACCAAAGGATGCCAAGACAACTGTTTATCACTGTTATCACTCTCACTGCATGATATTACAAGGATATTTCATGTTTAACCAGAAGAGACGAGATGGACTCCAAATGAAATGGATTAGTAGAGGCCATCTGCTCTTCATGTTTACTGGCAACTCAGTTAACAAATAATGGAGCCCATCAAAAATGGCCTTTCCTAAGGCAACAGTCTCTATTACTAATGCTTATAGTTAACATTAGTGATTTATACAAACCTTTGACTCCAACACTTCAGTATGTAATTCACCCAACATGTTTGCACTCCAGACGTGAATCATTCTTCAAATCATGCGTCTTACTTTCGAGATATCATTGATTTTACTCCTTGGCAAACGATAAAATGGACAATCCACAGACTCAAATCGTATAGAGACCAGAATATCATAGGAACTTGAGGACTCTTTTGGTTTAGGTGCATTGGAGAAGAAATAGGTACTAATAGGTTAGCAAGAAGCATTTTTTAATGTATCTTTAGCAATGTGAATTTGTGCTTGGTTTGTAATCAGTCACCCGTTTCTTCTCTCTTGTACTTGTTAATGACCAACAGTTGTGACTGGCATCATCAGAGCAGATCTCTGCCAGCTGCTGGTTTACGCCACAACAAGCCTGTTTGTTTATTCAGACCGTATTTGTGTAACTGTTGTCATTTGGCGGAGACACCAGTATCATGACAATGAATGTTTTTTGTTGGTTTTGGAATGTGGCAAATTAAATCTTGTTTTAAAATCAAGTGTTTTGTCGGGTATCAAGCATGCTTATTTAGCAGGCAGATTAAATAATGCAGCTACTTTAATTCTAAATTTGTTTTTTTAAATGAACAGTGAAATGAGTAGATACTGCATAATGTGTTCTTGGATGTTTCTTCGGTCAAATTCAAGATTTATCTATGTATAAGGGAAAGTACATTTTAGGTCCTCTAACCAGTGACCATTTAATCCCATTTTTGCCCTTCATCAGATTGCTTTAAATTGTTCTGCGGTGTGACAAATGAAATGTACTTTTCCATGTAGTTCATAAAAGATGCATGCATAGTAATTAGCAAATGCTGCTTAAAATAGTTTTGCATTGATTTGTACATCATGCACACCACAAGACGTGAAAATTGCAAACATATTTCATGTCAAACAACCAATTTCTAATAAAAGCCCATTTTATTCATATATCCATATTTGTCAGTTGACCGCCACTGTCTTCACTACACTCTAAAAAACACTGGGTTAAAAACAACCAAATTTGGGTTGTTTTTAACCCAAAGGCTGGGTAAATATACACATGTTGGGTTAATTTTACCCAGGGTAACATAAAAACTACCCAAACACTGGGTTGTTACGTCTGACCCAGGATCTGGGTAACACAAAAACTACCCAAACACTGGGTTGTTACGTCTGACCCAGGATCTGGGTAACACAAGAACTACCCAAACACTGGGTTGTTACGTCTGACCCAGGAGCTGGGTAACACAAAAACTACCCAAACACTGAGTTGTTACATCTGACCCAGGATCTGGGTAACACAAAAACTACCCAAACACTGGGTTGTTACGTCTGACCCAGGAGCTGGGTAACACAAGAACTACCCAAACACTGGGTTGTTACGTCTGACCAGGAGCTGGGTAACACAAAAACTACCCAAACACTGGAAAAATAACCCCAAAAAATTACCCAAAATGCTCAGCCCAGGACTTGGGTAGAAAAAATAACCCAAGATTTTTTTAGTGTAACATTGGAAGGTGCATAAAGTTAAACGGTGTGAACGCCACTTCTATTATGTGTACAAGTTAATTTTATTGTGTGTCTTTATCTCATTGAAAAGTGTTTGATTTGTGTGGTTGGATGCTGCAGAGACATTCATTTTATTTGCAAGGCAGTTTGTGTAACGCCCTCTTTAACCTCTGGCTGTGTTCTGTATCCTGATCTTTGGCTTGAGAGCTTGACATTGTTCTTAGCTAAAGGACATGAATACACATAAAATCTGAGCAGGTGTATATATATCCATCATTCAGTCGAATGTATGCACGCATCCACCCCAACACAATCTCATCTTGCAGGCTGGTGAAGGAGACGCCCTGATAGAGTTTCTCCAGATGTGTTGCATGTTGTCGTGTGTCTCTGTGCAGGTATCAGACGGAGATGATTTACTGGCCCAGGGAATATCTGTTGCTGCTAATTTTGGCATTGTCACTGACATTGCTTTACCCTTTTGTCTGTTATTGTGTAGGGATTCAGTCCCACAATGCATCTCTGAGTGCTGTCACAATGTGGTGTGACAGAGAAATTTATACACAATGTACTGCCTTAGTTCTTCATGGATCTGGTGACTGTGGAGGTCATTTGAGTTTAGTGAACTCACTGTCATGTTTGAGATGATTTGTGCTTTGTGGCGGTGTGTTATCCTGCTGGAAGTAGCCATCAGAAGATGTTCATAAAGGGATGGACATGGTCAGGTAGAGTTTGGTGTTTAAATGATCCTCAACTGGTACTAAGAGTCCCAAAGTGTGTCAGGAAAATCTCCCTCACAACATTTCCACCACCATCAGCCTGAACCGCTGATACAAGGCAGGATGGGTCCATGCTTTCATGTTGTTTACACCAAATTCTGACCCAAACATCTGAATGTTGCAGCAGAAATCCAGACTCATCAGACCAGGCAACTTTTTTCCAATCTTCTATTGTCCAGTTTTGGTGAGTCCGTGTGAATTGTAGCCTCAGTTTGCTGTTCTCAGCTGACAGGAGTGTTGCAGCTCATCTGCTTCAAGGTTCAACGTGTTCCTCGTGTGTAACGAGTGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU799298 True 4031 lncRNA 0.39 2 902610 907382

Neighbor

gene id symbol gene type direction distance location
CI01180000_00862066_00867985 NA coding upstream 34498 860746 ~ 868112 (+)
CI01180000_00812535_00858607 NA coding upstream 43605 811857 ~ 859005 (+)
CI01180000_00765917_00776252 NA coding upstream 125699 765797 ~ 776911 (+)
CI01180000_00737754_00743866 NA coding upstream 158399 735310 ~ 744211 (+)
CI01180000_00661446_00671602 MSH6 coding upstream 230422 661109 ~ 672188 (+)
CI01180000_00947514_00949868 NA coding downstream 39039 946421 ~ 950906 (+)
CI01180000_00955725_01050852 SIPA1L2 coding downstream 47540 954922 ~ 1051826 (+)
CI01180000_01196818_01224406 EGLN1B, EGLN1, EGLN1A coding downstream 289404 1196786 ~ 1224915 (+)
CI01180000_01372608_01374455 NA coding downstream 463379 1370761 ~ 1374547 (+)
CI01180000_01380859_01385445 NA coding downstream 473319 1380701 ~ 1385783 (+)
G678638 NA non-coding upstream 19582 880016 ~ 883028 (+)
G678736 NA non-coding upstream 25012 877352 ~ 877598 (+)
G678660 NA non-coding upstream 99120 802951 ~ 803490 (+)
G678653 NA non-coding upstream 103672 798689 ~ 798938 (+)
G678720 NA non-coding upstream 115948 786361 ~ 786662 (+)
G678649 NA non-coding downstream 133003 1040385 ~ 1090851 (+)
G678641 NA non-coding downstream 203821 1111203 ~ 1116492 (+)
G678773 NA non-coding downstream 210907 1118289 ~ 1118645 (+)
G678775 NA non-coding downstream 218556 1125938 ~ 1126610 (+)
G678631 NA non-coding downstream 248940 1156322 ~ 1159139 (+)
G678440 NA other upstream 750958 147934 ~ 151652 (+)
G678751 NA other downstream 152461 1059843 ~ 1066091 (+)
G678637 NA other downstream 242169 1149551 ~ 1155672 (+)
G678946 NA other downstream 610971 1518353 ~ 1612547 (+)
G679076 NA other downstream 887788 1795170 ~ 1799433 (+)
G679324 NA other downstream 1481485 2388867 ~ 2397360 (+)

Expression


Co-expression Network