G679076


Basic Information

Item Value
gene id G679076
gene name NA
gene type unknown
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01180000
NCBI id null
chromosome length 11503085
location 1795170 ~ 1799433 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU799769
AGCCAATTCTAAGTAGAACAATTCATGCATTGAAAGCTTTTCTTTTACAAGTTACAGTTTGAAACAGACTTTTCAAGGATAGGTCCAACCACATATCTTAATGTATGCATACTAAAATTAGACATACTCTTCTGGAGGATCCTGAAGTCTGGAGAGTCTTCAATAAGTGTTCCCTCCCTGTACCAGTCCACTTTGGGGGAGGGACTGCCTTTTACTCGGCACTCCAGCACTACCAGCTGACTCTCCAGAGCCAGGACATCCTGAAGGTTCTTTGTAAAAACAGGAGCTGCCATTATGGGCCTTACATCAAAGTCTTGAAAATAAGTACTGCTGCCATTCAGATTCTCAGGAATGCTCTGTTGAGATGTTAACAGTATATCGGAAATACTTTGGCTTGATGGAAGTGGTGATGGTGCTATGGTGAGGGGTGGAGAAGGTGGAGTGGGTTCAATCTCAGATATTGGCGTTGGTGGTACAGGTATGGTTTGTTCTAGTGCAGGAACGGTTGGTTCAAGTACAGGTATTTCCGAGCTGATGACCTTGGTACTCAGAAGTTCTGTATCTTCTTGCTCAGAGGGAGGGTCAGCGGTCAGCAGCACTGCTTCTGCGTCTGAAGGTGCTGGTGGCTCAGCGCAGGTGGTTGTTACAGTTGGTATGGCGTCTTCAGCAGATGTGTTGGATTCTACCGAGACCTCAGCAGGCTTGGGCTGAGGAGATCTTTTATGAAGTTGTGCTTGAAAATGTTGTTCTCCGTCAGAATCCGATGAAGACGCTCCCTCAATGTAGATTTCTGCTGAGGTGGAGTCTGTGCCATAAAAGTTGGAGGCAAAGCACGAGTATCTGCCTGTATCTTCTTCAAAAGCCTCTGCTATGATCAGAGAGTGTCGCTCACCGTTGGTGATGATCTGAATATCAGGACTGTTTTCCAACTCTTTACCCTCACAAAACCACCTAGAGTGACTGTACAACAATTATTTTACTTCATCCCCTTCCGATTTCTTAAAATTTCCTCCCTTAATTTTAAAGCGATTCTGAAGCGACAAGTTGTGGTTCATTCCAAGGGCGAGACATGGCTGAAATGTATTGGGTTGGATCCATGAGCCAATGAGGGTCATTTCTAGTGAGTAAGACTCTACTTTGAAAGCGTGAGCTGCGGGGGAGAGACATCCAGCACTAGATCTGCACCTGTTCGGTCTATTTTCCCTCTCGACTCGCCCCACGGCGCAGGAACCCCTGATAAAGCTGGACAGCAGCATCCCTGAGCGACACACATGAACATACAGAGCTAAACATAGAACGGCCTCTCATTCAATCACCAACACAACAAACAC

Function

NR:

description
cilia- and flagella-associated protein 206-like

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU799769 True 1331 TUCP 0.46 6 1795170 1799433

Neighbor

gene id symbol gene type direction distance location
CI01180000_01747067_01755038 GPR137B coding upstream 39913 1747067 ~ 1755257 (+)
CI01180000_01576739_01578505 GNG4 coding upstream 215764 1576739 ~ 1579406 (+)
CI01180000_01542059_01545609 GGPS1 coding upstream 249090 1542059 ~ 1546080 (+)
CI01180000_01492241_01493781 NA coding upstream 300724 1491671 ~ 1494446 (+)
CI01180000_01380859_01385445 NA coding upstream 409387 1380701 ~ 1385783 (+)
CI01180000_01828938_01830221 DNAJC12 coding downstream 29505 1828938 ~ 1830814 (+)
CI01180000_01832263_01834405 COX5B.2, COX5B2, COX5B coding downstream 32580 1832013 ~ 1834999 (+)
CI01180000_01865632_01870994 NA coding downstream 66076 1865509 ~ 1871089 (+)
CI01180000_01915282_01926129 NA coding downstream 115459 1914892 ~ 1926269 (+)
CI01180000_01942458_01949580 NA coding downstream 142694 1942127 ~ 1950647 (+)
G679072 NA non-coding upstream 15472 1778590 ~ 1779698 (+)
G679052 NA non-coding upstream 18045 1776710 ~ 1777125 (+)
G679069 NA non-coding upstream 29632 1765310 ~ 1765538 (+)
G679064 NA non-coding upstream 59409 1735417 ~ 1735761 (+)
G678942 NA non-coding upstream 61453 1727161 ~ 1733717 (+)
G679077 NA non-coding downstream 3972 1803405 ~ 1808055 (+)
G679080 NA non-coding downstream 9449 1808882 ~ 1809140 (+)
G679160 NA non-coding downstream 231305 2030738 ~ 2031031 (+)
G679165 NA non-coding downstream 252094 2051527 ~ 2061011 (+)
G679202 NA non-coding downstream 299108 2098541 ~ 2098808 (+)
G678946 NA other upstream 239019 1518353 ~ 1612547 (+)
G678637 NA other upstream 639498 1149551 ~ 1155672 (+)
G678751 NA other upstream 729079 1059843 ~ 1066091 (+)
G678440 NA other upstream 1643518 147934 ~ 151652 (+)
G679324 NA other downstream 589434 2388867 ~ 2397360 (+)
CI01180000_02690045_02691641 NKX6-2, NKX6-2.L, NKX6.2 other downstream 890329 2689271 ~ 2693221 (+)
CI01180000_03571292_03571611 GNG2.L, GBG2, GNG2 other downstream 1753844 3569165 ~ 3573135 (+)
G680736 NA other downstream 1966258 3765691 ~ 3784441 (+)
G681137 NA other downstream 2983872 4783305 ~ 4785631 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_006974 CU928131.1 coding NC_007124.7 CM002897.2 50287009 ~ 50309969 (-)