XLOC_022867 (zfx)


Basic Information

Item Value
gene id XLOC_022867
gene name zfx
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 17005647 ~ 17023677 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00045452
ACTCACACAAGAGCCCCGTCTGATTCTGCCCGAGTCTGGGGGTGGGAGACGCAAACCCGCACGGCCTTGGGAACAAATCGTATATATACTACAACAGATCCTATATTATGCAGATGAACGGTGAAGACAATGGATGAAGATGTAACTGTTCTCTCTCTTCATTCCCATGAGCCTAAGATCATATTCCACGGCACAGAGTGTGATGGAGAAGAAGACGAGGTGGTGGTGGAGCTGCAGGAGTCAGTGCTGGTGTCTGATGTGGAGGGTGAGAAGATCGCGGTGCACGGTCTCACTCATGAGGAGCTGGTCATCCAGGAGGCCATCGAGGATGTGGTGGCGGAGTATGTGCCTTGCACTGATGAAGAGGACGATgttgatgatgacgatgatgaaggGCTTGGCACCATTGCCGTGGAGACCTGTGTGATGTCACCTGATGATGTGGCTCTGGAGGATGAAGGGCTGCAGGTGGATGTGGTGACCGACGCTCAGGTACAAGAGGATCCAGACACCTGCGGAGACTATCTGATGATCTCCTTGGATGAAGCTGGAAAGGTGGTGTCTGATGAAGATGCTAAGGTCACCATTGAGGGCACTTTAGAGGATTCAGAAGATGTGGAGAAGGATGATGATGGTCAAGAGGTCATCAAAGTGTACATCATCAAGGCTCACCCAGGGGAGGATGACTTGGGAGGCACAGTCGACATAGGAGACGCTGAGCTAGATGTGGATGAAACCGTGGAGCTGGTGGATTCTTCTGGACTGCCCATACGAGAGAAAATGGTGTACATGTCAATGGATGAAGCCAATCAAAGTCAGGATGACATCAATGTGGCTAAAATCACAGATGAGGTCTACATGGAAGTGGTGGTTGGGGGTGAAGACCCTGGAAATGTTCAGAGGACACTTGAAAACGCATCACTTAGCAAAGACTTCATGCCTGTGGCTTGGGCAGCTGCTTACGGTGGGGAAGAGAGCGAAAGCTGTGAGAACCGGAATGGAGCAGCTAGTGCTCTGCTGCATGTTGATGAATCTGACATGATTGAAAGGCTCAGTCGGCAACGAAACAAGAACAGGGGCAAAAAACGCTCTGAATTTCGGCACATTCAGACAGCAATCATCATCGGGCCTTACGGCCAGCCTCTTACAGTGTACCCTTGTATGCTCTGCGGCAAGAAATTCAAGTCACGTGGTTTCCTCAAGCGCCACACCAAGAACCACCACCAGGATGTCGTCAACCGAAAGAAATACCAGTGCACAGACTGTGACTTTACCACTAACAAAAAAGTCAGTCTCCACAACCACATGGAGATCCACACTCTCAGTAGTAAAGCCCCATTTGAGTGTGAAGTGTGTGGGAAAGAGTTTCACCAGCAGGCTGCGCTGTTCTCCCATCGTCTGCAGCACCACCACAGAGAAGCCAAGCTTCAGATCTCACCACCAACCACCAAAATGCACAAGTGCAAGTTCTGCGAATACGAGACTGCAGAACAAGGACTCCTCAACCGGCACCTGCTCGCCGTTCACAGCAAGAACTTCCCGCATATTTGCGTAGAGTGTGGGAAAGGTTTTCGGCATCCTTCAGAGCTGAAGAAACACATGAGAACACACACCGGTGAAAAACCGTACTCATGCCTTTACTGCGACTACAAATCAGCCGATTCGTCCAATTTAAAGACGCACGTTAAAACCAAACATAGCAAAGAAATGCCCTACAAGTGTGACCGATGTTTCCAGACATTCGCTGAACCAGAGGAGCTTCTACAGCACAGCTTAACGCACGAGGAAGCCAAAACGCACCAGTGCACCCACTGTGACCATAAAAGCTCGAACTCCAGTGACCTGAAGCGCCACATTATTTCAGTTCACACCAAAGACTATCCACATAAATGTGAAGTCTGCGGCAAAGGCTTCCACCGGCCGTCCGAGCTCAAGAAACACTCGGCCGCCCATAAGGCTAAGAAGTTGCACCAATGCAGGCATTGCAATTTCAAGATCGCAGATCCATTTGTTCTCAGTCGGCACATTTTGTCGGTGCACACCAAGGAGCAACAGGCATTTCCTGATAAAAAGGGTCTTAAGAAGACGTTTGGACTCGGAGCTCATGGAGGTAAGAAAATATTGGGGGGTGCCGGTTTGTCGAAGGGTCACCGGGAGCGAAGGGTGTACCAATGCCAGTATTGTGACTACAGCACAGGCGACGCGTCTGGTTTCAAAAGGCACGTGATCTCCATTCACACCAAAGACTATCCTCACCGTTGTGACTTCTGCTCGAAAGGTTTCAGAAGACCATCCGAGAAGAATCAGCACATCATGAGGCATCATAAAGACCTAATGCCTACCATGTGACCTGCCATACTATCTCCAATCAGGAAAAGGTTCATTCTGATATAGCTGTGGCCTTTTTGGCTGAAAGCGAAGTCTGGTTGAGCTTTTTCAGATTGCAGATGGTATAGAAAGAATGAAAGCGGGAGTAAATGGACCATCTAATGTGTCTGATTACCCCTCTATAATGTTCAAGTGAATGTTTCGAAGATTCATGAACCTTTCTTTAGATCCTGAAGAATAAAAAGCTAACCATTGTTGTGACCAGCTGTAGGGTAAATGCACCTCTAGATAATCTTGCATATTAAATCAAGTGTGGATGGCATTACATGTTGATATTGAGCATCTGGTGATACATTTGAATTATGACTCCTGCATTGCATGTTACACAAACTGTGTGTGAACAGCTTTGATGATTGTGGCGTGAATGTGCACATGCGTTTACTAGTACAAGTTTTGAGAATGGGCTTGAAAAAGTCTATTGTCGTTAAACGATGGTGCTAATGCTTTATGTTTAGCTTCAGATGTGCAGAATGTCTAATGAAAACTAATTAGAAATAATCACCTCATGCCCTGGCTGCTGGAAAAGTGTTGTCACTTGAGAGCAAATGGCTGATATAGGCTTTAATTTGGGTTCTAAAACCAAACCGTGCTGCCACATTCATTTACCAATAACAGCTGTCTGGACTTGAATGTAATTTAGGTTTTCTTGGTAATATAACAAGCTTTGATCAGAGTGTGCCGTCATTACATCAGACTGAAatctaaatttgttttaatttagatgCTTGTATGTTTGTGTACTCCTCGAATGTGGCCATTTGGCTTTTGGTCTGTTTGTTGTAAAACTCACcctcaaataaatattattattattgttattatgaagaAATTTAgggtaaattttattttttacacagatcCAGAAAATGTATAATTTGGAATAAACAGATTCTAAAAGAGGTTatgttatgtgtatatgaaatatttgtaaatacagaagTAATAAACAGTATTTTGTGTCC
>TCONS_00045453
GAGTCTGGGGGTGGGAGACGCAAACCCGCACGGCCTTGGGAACAAATCGTATATATACTACAACAGATCCTATATTATGCAGATGAACGGTGAAGACAATGGATGAAGATGTAACTGTTCTCTCTCTTCATTCCCATGAGCCTAAGATCATATTCCACGGCACAGgtcgcacaccagaagcgctgcttGGCGACGTGCAGCATTGACTTCATATCTGCCGCCCCAcagagtagaggtctgcattcccgcggctgtaccGCTGGAGCGAGCGAGcacgtAGTGTGATGGAGAAGAAGACGAGGTGGTGGTGGAGCTGCAGGAGTCAGTGCTGGTGTCTGATGTGGAGGGTGAGAAGATCGCGGTGCACGGTCTCACTCATGAGGAGCTGGTCATCCAGGAGGCCATCGAGGATGTGGTGGCGGAGTATGTGCCTTGCACTGATGAAGAGGACGATgttgatgatgacgatgatgaaggGCTTGGCACCATTGCC
>TCONS_00045454
ATCCTATATTATGCAGATGAACGGTGAAGACAATGGATGAAGATGTAACTGTTCTCTCTCTTCATTCCCATGAGCCTAAGATCATATTCCACGGCACAGAGTGTGATGGAGAAGAAGACGAGGTGGTGGTGGAGCTGCAGGAGTCAGTGCTGGTGTCTGATGTGGAGGGTGAGAAGATCGCGGTGCACGGTCTCACTCATGAGGAGCTGGTCATCCAGGAGGCCATCGAGGATGTGGTGGCGGAGTATGTGCCTTGCACTGATGAAGAGGACGATgttgatgatgacgatgatgaaggGCTTGGCACCATTGCCGTGGAGACCTGTGTGATGTCACCTGATGATGTGGCTCTGGAGGATGAAGGGCTGCAGGTGGATGTGGTGACCGACGCTCAGGTACAAGAGGATCCAGACACCTGCGGAGACTATCTGATGATCTCCTTGGATGAAGCTGGAAAGGTGGTGTCTGATGAAGATGCTAAGGTCACCATTGAGGGCACTTTAGAGGATTCAGAAGATGTGGAGAAGGATGATGATGGTCAAGAGGTCATCAAAGTGTACATCATCAAGGCTCACCCAGGGGAGGATGACTTGGGAGGCACAGTCGACATAGGAGACGCTGAGCTAGATGTGGATGAAACCGTGGAGCTGGTGGATTCTTCTGGACTGCCCATACGAGAGAAAATGGTGTACATGTCAATGGATGAAGCCAATCAAAGTCAGGATGACATCAATGTGGCTAAAATCACAGATGAGGTCTACATGGAAGTGGTGGTTGGGGGTGAAGACCCTGGAAATGTTCAGAGGACACTTGAAAACGCATCACTTAGCAAAGACTTCATGCCTGTGGCTTGGGCAGCTGCTTACGGTGGGGAAGAGAGCGAAAGCTGTGAGAACCGGAATGGAGCAGCTAGTGCTCTGCTGCATGTTGATGAATCTGACATGATTGAAAGGCTCAGTCGGCAACGAAACAAGAACAGGGGCAAAAAACGCTCTGAATTTCGGCACATTCAGACAGCAATCATCATCGGGCCTTACGGCCAGCCTCTTACAGTGTACCCTTGTATGCTCTGCGGCAAGAAATTCAAGTCACGTGGTTTCCTCAAGCGCCACACCAAGAACCACCACCAGGATGTCGTCAACCGAAAGAAATACCAGTGCACAGACTGTGACTTTACCACTAACAAAAAAGTCAGTCTCCACAACCACATGGAGATCCACACTCTCAGTAGTAAAGCCCCATTTGAGTGTGAAGTGTGTGGGAAAGAGTTTCACCAGCAGGCTGCGCTGTTCTCCCATCGTCTGCAGCACCACCACAGAGAAGCCAAGCTTCAGATCTCACCACCAACCACCAAAATGCACAAGTGCAAGTTCTGCGAATACGAGACTGCAGAACAAGGACTCCTCAACCGGCACCTGCTCGCCGTTCACAGCAAGAACTTCCCGCATATTTGCGTAGAGTGTGGGAAAGGTTTTCGGCATCCTTCAGAGCTGAAGAAACACATGAGAACACACACCGGTGAAAAACCGTACTCATGCCTTTACTGCGACTACAAATCAGCCGATTCGTCCAATTTAAAGACGCACGTTAAAACCAAACATAGCAAAGAAATGCCCTACAAGTGTGACCGATGTTTCCAGACATTCGCTGAACCAGAGGAGCTTCTACAGCACAGCTTAACGCACGAGGAAGCCAAAACGCACCAGTGCACCCACTGTGACCATAAAAGCTCGAACTCCAGTGACCTGAAGCGCCACATTATTTCAGTTCACACCAAAGACTATCCACATAAATGTGAAGTCTGCGGCAAAGGCTTCCACCGGCCGTCCGAGCTCAAGAAACACTCGGCCGCCCATAAGGCTAAGAAGTTGCACCAATGCAGGCATTGCAATTTCAAGATCGCAGATCCATTTGTTCTCAGTCGGCACATTTTGTCGGTGCACACCAAGGAGCAACAGGCATTTCCTGATAAAAAGGGTCTTAAGAAGACGTTTGGACTCGGAGCTCATGGAGGTAAGAAAATATTGGGGGGTGCCGGTTTGTCGAAGGGTCACCGGGAGCGAAGGGTGTACCAATGCCAGTATTGTGACTACAGCACAGGCGACGCGTCTGGTTTCAAAAGGCACGTGATCTCCATTCACACCAAAGACTATCCTCACCGTTGTGACTTCTGCTCGAAAGGTTTCAGAAGACCATCCGAGAAGAATCAGCACATCATGAGGCATCATAAAGACCTAATGCCTACCATGTGACCTGCCATACTATCTCCAATCAGGAAAAGGTTCATTCTGATATAGCTGTGGCCTTTTTGGCTGAAAGCGAAGTCTGGTTGAGCTTTTTCAGATTGCAGATGGTATAGAAAGAATGAAAGCGGGAGTAAATGGACCATCTAATGTGTCTGATTACCCCTCTATAATGTTCAAGTGAATGTTTCGAAGATTCATGAACCTTTCTTTAGATCCTGAAGAATAAAAAGCTAACCATTGTTGTGACCAGCTGTAGGGTAAATGCACCTCTAGATAATCTTGCATATTAAATCAAGTGTGGATGGCATTACATGTTGATATTGAGCATCTGGTGATACATTTGAATTATGACTCCTGCATTGCATGTTACACAAACTGTGTGTGAACAGCTTTGATGATTGTGGCGTGAATGTGCACATGCGTTTACTAGTACAAGTTTTGAGAATGGGCTTGAAAAAGTCTATTGTCGTTAAACGATGGTGCTAATGCTTTATGTTTAGCTTCAGATGTGCAGAATGTCTAATGAAAACTAATTAGAAATAATCACCTCATGCCCTGGCTGCTGGAAAAGTGTTGTCACTTGAGAGCAAATGGCTGATATAGGCTTTAATTTGGGTTCTAAAACCAAACCGTGCTGCCACATTCATTTACCAATAACAGCTGTCTGGACTTGAATGTAATTTAGGTTTTCTTGGTAATATAACAAGCTTTGATCAGAGTGTGCCGTCATTACATCAGACTGAAatctaaatttgttttaatttagatgCTTGTATGTTTGTGTACTCCTCGAATGTGGCCATTTGGCTTTTGGTCTGTTTGTTGTAAAACTCACcctcaaataaatattattattattgttattatgaagaAATTTAgggtaaattttattttttacacagatcCAGAAAATGTATAATTTGGAATAAACAGATTCTAAAAGAGGTTatgttatgtgtatatgaaatatttgtaaatacagaagTAATAAACAGTATTTTGTGTCCAAGGTGTTTGCTTTTCATTATAAAATTGAGCatgaatgacacacacacacactcacacattagTTTTTTGCCAACCTATTTAATCCATCGGCAGCAAACAAAACCAACAAAGAGAAAAAAGAAGTTATTCTTACAGGTGGTGTGCCATAATGGTGATCAGACATGTTAGCCAACAGTGGCACCTCTAAACATGATACATCATTAAGAATTGAGTTAAAAACGCATCATTTTGGTGTAAAAAATACTTTGTGATTCTCTTCCCTTTGCTTGAGATTGTGCAGACTGTTTAAggcacaaataaaaacaatataatgtgAAAGAGACCAAAACCAAGCCGACCGTAAATtctaaaaaatctaatcaaatgaaACAGCTTATAAAAGTCTTACAGGTGGTGTGCCATAATGGTGATCAGACTTGTTAGCTAGCATTGGCACTTATGGTCTAGAACATGAAAAACTGAGTTTTGGTAAGGAAATACTTCTCTCACCTCTGCTTTTGATTACTCTGTAGTTGCAAACTGGTCAATCAATATGAGCACACCATGACTGTTCAAGGCACAAAGAATGTTTTCATACAAAGTGAAAGAGACCAAAACCAAGCCGACAGTAAATTCAGATCTGTTTTTGTCTGAAATGAGTGGACCGGCTGAAGCTGTCTTTGTCTTCGCTTGATGAGGTGATTATGCGGCAACTGAGCATTCTCCTGTAGAACACAAGTTTATGTTAGaaagttatttataaatgatgtttctttcaacacattgtcagtttttttaaaataacatttttttcccCATGAAAAATCATAAAACAAACCGCCTGGTGGAAGTATGAGAATGTTTTCATCAAGAATGCCAGTGTCCCGACAGAACTGCCTGAACTTCTCCTTCAAGTCATCAGCAATTTCTGGAGTGCGACCTGTGACAAAAATCCCAAGGGAATCTCAGTTTTTGTAATAActtcaaattttttaaataacttggtTAGAGGCATGactgattttttaatatttttttcttaaattatgGTAGCACAACCATGATAGATTTTTTGTTACCATGGTTTTACTCCAGACTAGCCTTTTTTAATAAAACCATGGTTCATTTACTATGGTTGATTTTTGTAAGGGAAAACATTGTCAACATTAAGGTTAAGCGGCTACTTGTATTGTCTACAAAAGATGTCCTTACTGAGGAGTTTGTTGAGGACATCAGATTCTCCTGCTTTGGTTTTGATGACATGAATAACAGCGTACTTGTCAAATGTGGCATCAACCACGCGCAAATCATTGTCATTTTTCCAACctgaaaaaaaatttgcattCGTATTTTAGCCCAGATAAAGCATGTTAACTATTAgatgaaaaaataagaaaaaaacaatctTACGCTGGCTGTAGAAGACAAATCTTCCAGGAGTCTCGGTTTTCTTGGCGAGGTTCGTCATTTTCCAGCAGGTACCATCACTCCTAAAAAACAAATTACCGAAGGTATTGATCAAAAGGTAATGCATCAAAACTATTTCCTTTGGCACCAATGAAGCTTGTTTGCATACTTTGGTTTATAGCAATTGAGTTCAAGGTCTCCCTCTTCGGTGGGCACCAGCATGGCAGTTCCCATCTTCATGTCAACCTTTTTACTTGCAAACCATTTTGCGTTTGTAGCAAAGCCAACGAGATACCACTTTCCTTCCACCTGAAGAAAATTTGTTAGCGCAATTATCTCACTTAGTGCCCTTCAGTTTAACGCATGGTGTAAATGCTCGTATATTTGAGGAATTTACCTTTTGCAGGTCGAAGTCAGTCATGGGCATGACATCAGCCGAGGCGAAAACTGCGCAGAGCAGAAGGCACAGCATCTTTACTACGACACTCGTCATGTTTGCAGAAGTGTTGCTTCTCTCTCTGTTTGCAGTTCACAAGGCAGAGTCGGGTGTGTGGAGGAGACGAATGGCAGCCCCTTTTTATCCTCAAACTGAGCCCCCCAAAGCCGAGTCCCTCCCTACTTGCAGACCCAACAGGAATGATAATTACAGTCGTTACACAACTGCTAACACGCACGTGTGTTTTCTTCTAGATGTACCGCATGTGGGTGCGTTTTATAATTTATATGTCCATATTTGACCTTCAAAATACATGTTTATTAAGGCTCTTGTGTTCATTCTGGTTACATTTATTTGATAATCTAAAATTTAACAAAAGCATGTACATCGCAACTGGCTGC

Function

symbol description
zfx Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be located in nucleus. Orthologous to several human genes including ZFX (zinc finger protein X-linked).

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0005634 nucleus cellular_component
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-061220-2 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be located in nucleus. Orthologous to several human genes including ZFX (zinc finger protein X-linked).

Ensembl:

ensembl_id ENSDARG00000074453

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00045452 False 3350 mRNA 0.46 8 17005647 17021453
TCONS_00045453 False 493 processed_transcript 0.54 4 17005678 17011082
TCONS_00045454 True 5477 mRNA 0.42 7 17007407 17023677

Neighbor

gene id symbol gene type direction distance location
XLOC_022866 eif2s3 coding upstream 2697 16983269 ~ 17002950 (+)
XLOC_022865 cct5 coding upstream 92750 16905188 ~ 16912897 (+)
XLOC_022863 NA coding upstream 103786 16719606 ~ 16901861 (+)
XLOC_022864 BX004771.1 coding upstream 197999 16807521 ~ 16807648 (+)
XLOC_022862 sema5a coding upstream 298666 16393302 ~ 16706981 (+)
XLOC_022868 pip4k2aa coding downstream 45047 17068724 ~ 17127833 (+)
XLOC_022869 mllt10 coding downstream 117261 17140938 ~ 17216312 (+)
XLOC_022870 commd3 coding downstream 233116 17256793 ~ 17259643 (+)
XLOC_022871 bmi1a coding downstream 236324 17260001 ~ 17267235 (+)
XLOC_022872 spag6 coding downstream 246172 17269849 ~ 17279904 (+)
XLOC_022861 BX005275.1 non-coding upstream 796647 16207562 ~ 16209000 (+)
XLOC_022859 NA non-coding upstream 810917 16166765 ~ 16194730 (+)
XLOC_022860 BX005275.2 non-coding upstream 828347 16174199 ~ 16177300 (+)
XLOC_022873 NA non-coding downstream 257163 17280840 ~ 17282535 (+)
XLOC_022874 BX005392.4 non-coding downstream 294844 17318521 ~ 17319849 (+)
XLOC_022875 NA non-coding downstream 298809 17322486 ~ 17325645 (+)
XLOC_022876 NA non-coding downstream 308489 17332166 ~ 17334612 (+)
XLOC_022879 CU041377.1 non-coding downstream 714842 17738519 ~ 17738635 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000018_02115961_02124173 ZFX coding CI01000018 null 2115961 ~ 2124841 (+)