RNA id: TCONS_00045453


Basic Information

Item Value
RNA id TCONS_00045453
length 493
RNA type processed_transcript
GC content 0.54
exon number 4
gene id XLOC_022867
representative False

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 17005647 ~ 17023677 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GAGTCTGGGGGTGGGAGACGCAAACCCGCACGGCCTTGGGAACAAATCGTATATATACTACAACAGATCCTATATTATGCAGATGAACGGTGAAGACAATGGATGAAGATGTAACTGTTCTCTCTCTTCATTCCCATGAGCCTAAGATCATATTCCACGGCACAGgtcgcacaccagaagcgctgcttGGCGACGTGCAGCATTGACTTCATATCTGCCGCCCCAcagagtagaggtctgcattcccgcggctgtaccGCTGGAGCGAGCGAGcacgtAGTGTGATGGAGAAGAAGACGAGGTGGTGGTGGAGCTGCAGGAGTCAGTGCTGGTGTCTGATGTGGAGGGTGAGAAGATCGCGGTGCACGGTCTCACTCATGAGGAGCTGGTCATCCAGGAGGCCATCGAGGATGTGGTGGCGGAGTATGTGCCTTGCACTGATGAAGAGGACGATgttgatgatgacgatgatgaaggGCTTGGCACCATTGCC

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0005634 nucleus cellular_component
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-061220-2 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be located in nucleus. Orthologous to several human genes including ZFX (zinc finger protein X-linked).

Ensembl:

ensembl_id ENSDART00000149406

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00046954 lncRNA upstream 103817 16719606 ~ 16901861 (+) False XLOC_022863
TCONS_00046953 lncRNA upstream 103817 16719606 ~ 16901861 (+) False XLOC_022863
TCONS_00045445 lncRNA upstream 105466 16726748 ~ 16900212 (+) True XLOC_022863
TCONS_00045438 lncRNA upstream 796678 16207562 ~ 16209000 (+) False XLOC_022861
TCONS_00045439 lncRNA upstream 797071 16207563 ~ 16208607 (+) True XLOC_022861
TCONS_00046955 lncRNA downstream 186141 17197223 ~ 17213775 (+) False XLOC_022869
TCONS_00046956 lncRNA downstream 186141 17197223 ~ 17214997 (+) False XLOC_022869
TCONS_00045466 lncRNA downstream 189041 17200123 ~ 17209579 (+) False XLOC_022869
TCONS_00046957 lncRNA downstream 189041 17200123 ~ 17213775 (+) False XLOC_022869
TCONS_00046958 lncRNA downstream 189376 17200458 ~ 17214997 (+) False XLOC_022869
TCONS_00045450 mRNA upstream 2728 16983329 ~ 17002950 (+) False XLOC_022866
TCONS_00045451 mRNA upstream 3038 16985181 ~ 17002640 (+) True XLOC_022866
TCONS_00045448 mRNA upstream 13162 16983269 ~ 16992516 (+) False XLOC_022866
TCONS_00045447 mRNA upstream 92781 16905188 ~ 16912897 (+) True XLOC_022865
TCONS_00045442 mRNA upstream 298697 16393302 ~ 16706981 (+) False XLOC_022862
TCONS_00045455 mRNA downstream 57642 17068724 ~ 17127833 (+) False XLOC_022868
TCONS_00045456 mRNA downstream 58338 17069420 ~ 17126997 (+) True XLOC_022868
TCONS_00045457 mRNA downstream 129856 17140938 ~ 17216064 (+) False XLOC_022869
TCONS_00045460 mRNA downstream 131799 17142881 ~ 17211940 (+) False XLOC_022869
TCONS_00045459 mRNA downstream 131799 17142881 ~ 17211940 (+) False XLOC_022869
TCONS_00045449 other upstream 20139 16983303 ~ 16985539 (+) False XLOC_022866
TCONS_00045446 other upstream 198030 16807521 ~ 16807648 (+) True XLOC_022864
TCONS_00045443 other upstream 455129 16393527 ~ 16550549 (+) False XLOC_022862
TCONS_00045423 other upstream 1592573 15412989 ~ 15413105 (+) True XLOC_022853
TCONS_00045420 other upstream 1960890 15020402 ~ 15044788 (+) False XLOC_022851
TCONS_00045465 other downstream 186141 17197223 ~ 17209646 (+) False XLOC_022869
TCONS_00045467 other downstream 189376 17200458 ~ 17209595 (+) False XLOC_022869
TCONS_00045468 other downstream 198275 17209357 ~ 17213775 (+) False XLOC_022869
TCONS_00045470 other downstream 198553 17209635 ~ 17214997 (+) True XLOC_022869
TCONS_00045481 other downstream 311562 17322644 ~ 17325645 (+) False XLOC_022875

Expression Profile

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