RNA id: TCONS_00046956


Basic Information

Item Value
RNA id TCONS_00046956
length 1621
lncRNA type sense_over
GC content 0.55
exon number 7
gene id XLOC_022869
representative False

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 17140938 ~ 17216312 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCAAACTCGCTACCGGGATCCTTTAACCTGGCACCATCCCATATGTTCGGAAACCGACTGAATCCTAACTCCGCCATGGCTGCACTGATCGCTCAGTCCGAGGGCTCCCCAGCAGATCAGGAGCTGGGAGACGGAGCTCTCGGCTTCTCCAGAAGAGGAAACTCACCAAAGACAAACCTCTCCCCTCGGTCTCCGCTGAGTGGGCTTCATATACGGTATGACGCAGGACCTATGGTTCCAGGGCTCGGGTCTGGTTCGGATACGCTGCCCCCTGCGGCCACCAGCATTGACCAGCTGCTGGAACGCCAGTGGAATGAAGGACAGCAGTTTCTTCTACAACAGGGTTCACAAGGAGATGTTCTGGCAATGCTGAAGTCCCTGCACCAGCTGCAGGTGGAAAACCGGCGCCTGGAGGAGCAAATCCGAACTCTCACCATGAAGAAGGAACGACTGCAGCTCTTGAGCGCTCAACTCTCTGTGCCTTTCACCCCTGCAAGCACCACGGCCACCACTGCCTCCTCTCCAATGTACCCCAGCAACACTCACACAGGATCCCCAGTCTGGTGGCCATAGTAGCGGAAGCAGCACGTCGTCTCTCTCCACCCCTCCGTCTGCAGCCCACAGCCCGCCCCAGCAGCAGGTGAACGGAGTCGGCATGGCCGGGGTGCCTGTCCAGCCTGGCAATGCCAACTCGTCCCTGCCTGCCATAGCCGGGGTGACGGGTCTGATGGGCGCTCTGCAGGGCAACCACCTGGCCATGAGTGGCATCGTGGGCGCCTTAAACGGAGTAATCCAAACCTCCCAGTCCAGCCTGACCCAGAACAGCAGTCCCCTGCCCCAAGCAGCAGGTTCTGCTCTATCAGTTAatgcaacaacaacagcagcagcagcaacaacagcagcagAATGACATTCAGTTCCAGCAGCTGCCAATCAACAGCCTCCTGCCCGGCAATCAGCCAACCACCAGCACAAACCCCTTCCTAGCCCACCACAATGACAACAACACTCCTAAAGCTGGAGTTAATACTGCAGCCATCAAACAAACTAAAAGACTGGGGGAGAAAGCTGTACCTGTGACAGGACAGGAGAAAACCTGATGCAGAAAGCAACATTACGGGGAGGTTCTGCCTTCTGGATCCCTTTCATCTGCTCACCCCATGAGGCTGGCAATCTGAGCAGCAAAGACCAGAACACTTACCCGCCACACGAAACCCTCACTAGCACCAGccttcattaacacacacacacatacacacttgccAGTTTGATGCCCATCTGGCAAACAACATGCTGCACTGAGTTTGTGGAAATCACTTGCTGTAAACTTATTGGGTCCCACGAggaccaaaacacacacacacacacacacacacacacacacacacacacacacacaccctgccaGTGTGTTGAAAATGACACGCTGGTGCAAGTCTCTGTGGGTGGAAAGCGTAAACCGATGGGACTGAAGGATGGAGACGCTTCTGGAACAATATCTGCTCACCGCTGTTACCTCTCTACACCCCTTTAACAATAAAAACCCTGTCGTTATTCGTCTATCTGTGTGTTTCAAGGCGTCAAACGTTTCAAAGCTGAAGCGATCAGACATTTGTGCACC

Function

GO:

id name namespace
GO:0060070 canonical Wnt signaling pathway biological_process
GO:0060729 intestinal epithelial structure maintenance biological_process
GO:0045944 positive regulation of transcription by RNA polymerase II biological_process
GO:0019725 cellular homeostasis biological_process
GO:0005634 nucleus cellular_component
GO:0031491 nucleosome binding molecular_function
GO:0042393 histone binding molecular_function
GO:0046872 metal ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00046954 lncRNA upstream 295362 16719606 ~ 16901861 (+) False XLOC_022863
TCONS_00046953 lncRNA upstream 295362 16719606 ~ 16901861 (+) False XLOC_022863
TCONS_00045445 lncRNA upstream 297011 16726748 ~ 16900212 (+) True XLOC_022863
TCONS_00045438 lncRNA upstream 988223 16207562 ~ 16209000 (+) False XLOC_022861
TCONS_00045439 lncRNA upstream 988616 16207563 ~ 16208607 (+) True XLOC_022861
TCONS_00045472 lncRNA downstream 41846 17256843 ~ 17259487 (+) False XLOC_022870
TCONS_00045473 lncRNA downstream 42803 17257800 ~ 17258655 (+) True XLOC_022870
TCONS_00046803 lncRNA downstream 65843 17280840 ~ 17282535 (+) True XLOC_022873
TCONS_00045479 lncRNA downstream 103524 17318521 ~ 17319849 (+) True XLOC_022874
TCONS_00046959 lncRNA downstream 107489 17322486 ~ 17325645 (+) False XLOC_022875
TCONS_00045462 mRNA upstream 16386 17145830 ~ 17180837 (+) False XLOC_022869
TCONS_00045461 mRNA upstream 16386 17145830 ~ 17180837 (+) False XLOC_022869
TCONS_00045455 mRNA upstream 69390 17068724 ~ 17127833 (+) False XLOC_022868
TCONS_00045456 mRNA upstream 70226 17069420 ~ 17126997 (+) True XLOC_022868
TCONS_00045454 mRNA upstream 173546 17007407 ~ 17023677 (+) True XLOC_022867
TCONS_00045471 mRNA downstream 41796 17256793 ~ 17259643 (+) False XLOC_022870
TCONS_00045474 mRNA downstream 45004 17260001 ~ 17267235 (+) False XLOC_022871
TCONS_00045475 mRNA downstream 45332 17260329 ~ 17267235 (+) False XLOC_022871
TCONS_00045476 mRNA downstream 47882 17262879 ~ 17263667 (+) True XLOC_022871
TCONS_00045477 mRNA downstream 54852 17269849 ~ 17276770 (+) False XLOC_022872
TCONS_00045453 other upstream 186141 17005678 ~ 17011082 (+) False XLOC_022867
TCONS_00045449 other upstream 211684 16983303 ~ 16985539 (+) False XLOC_022866
TCONS_00045446 other upstream 389575 16807521 ~ 16807648 (+) True XLOC_022864
TCONS_00045443 other upstream 646674 16393527 ~ 16550549 (+) False XLOC_022862
TCONS_00045423 other upstream 1784118 15412989 ~ 15413105 (+) True XLOC_022853
TCONS_00045481 other downstream 107647 17322644 ~ 17325645 (+) False XLOC_022875
TCONS_00045482 other downstream 119681 17334678 ~ 17337526 (+) False XLOC_022877
TCONS_00045484 other downstream 120521 17335518 ~ 17337959 (+) True XLOC_022877
TCONS_00045488 other downstream 523522 17738519 ~ 17738635 (+) True XLOC_022879
TCONS_00045489 other downstream 862546 18077543 ~ 18077659 (+) True XLOC_022880

Expression Profile

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