RNA id: TCONS_00045475


Basic Information

Item Value
RNA id TCONS_00045475
length 2251
RNA type mRNA
GC content 0.41
exon number 10
gene id XLOC_022871
representative False

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 17260001 ~ 17267235 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GATCACGTGATGCACGGGGCGGTCGAACTACAAGCCATTTTGGGGACGGTGTCAGTTTCCACTGAACCATCAGCGCAGCATTTTTCAAAGAGAAGACTGAAGGCGCTAGTCTGGAGAAAACGCACATCAGCCTGGCTGTTTTACACGCGGGAGGTCTAAATACGAAACCGGTTACGTCTCTCCAACAAAGCAAGGCACGCACATCGACAACAGGaccttttctattttttattattgtactgCGCCCTGCTCCACCGTTCTCTTATTGCAATTGACAGCGTCTGCAGCCCTTTTCAAGATGGCCGCTTGGCTCGTATTCATTTTCTGCTGATCGACTTATAACTTTCATTGTCTAACCAGCACCAGGCTCGACTATTCACTCCAGTCCAGAAAGGTTCTTTTCTATCCCATGACGATGCATCGCACAACAAGGATCAAGATTACAGAGCTCAATCCTCATCTGATGTGTGTATTATGTGGTGGATATTTCATAGATGCAACAACAATCATAGAATGCTTGCACTCATTTTGTAAAATGTGCATTGTCCGGTACCTGGAGACCAGTAAATACTGCCCCATATGTGATGTGCAGGTTCACAAAACAAAGCCACTTCTCAATATACGGTCTGACAAAACTCTACAAGACATTGTATACAAGTTGGTTCCTGGTCTTTTCAAAAATGAAATGAAGCGTAGGAGAGACTTTTATGCTGAACACCCATCTGTTGATGctgcaaATGGGTCAAATGAGGATCGAGGGGAAGTTGCTGACGAGGACAAGCGAATCATTACAGATGATGAGATTATCAGTCTGTCAATTGAGTTTTTCGATCATAGGGCGCAACAGCAAGGCTGCACAGAGGAGAGACAAAAAGAGGAGGTCAATAACAAAAGATATCTACAATGCCCTGCTGCCATGACTGTGATGCATTTGAGGAAATTTCTGAGAAGCAAAATGGATATACCTCCTACTTACCAGATCGAAGTTATGTATGAGGATGAGCCTTTGAAGGATTATTACACATTAATGGACATTGCCTACATCTACACGTGGAGAAGAAATGGACCACTGCCGCTAAAATACCGTGTGCGACCCAGCTGTAAAAAAATGAAGATTACCCACCCACAAGAGGGTTTGAACAATGCAAACCGATCTGAAAGCGACTCAGCCAGTGATAAGGCCTGCAGTCCTGCTGGAGTTCCATCCACCTCCTCACCACTACCGAGTCCGAGCACTCTGGTGCAGCCGTCACAACCTCATTTCACTCATATTTCCAGTCCTATTAACGGCACGACAATGACAAGCCCAAATCGACAGTTCAACTTCAGCAAAGTGCGAAAGTCAGCACTGAACGGATCTTCAACATCATCTGGATGATAAGGAACTATAAGATAAAGCCAACGCCAGATGTAATCCAGCTATTTCCATGCCAACATAGTGTCATGTAGATCTTTTTCTTTATGTCATTATTATCAATATGTTATACATGTAACTTTAACGTAGTGGAAATGACGCACTTCATTTGACACATTGCTGGAATTTCAGAGTTTGCGTGAGAACGTTGGAGGCCCATTTGATGGCAAAGTGGAGCGCAGTTTGATGGTTGTGGCAATTTCAGAATGCAGAAATTAATTAtacctttttatatatttttacttttggtCTACATTTTCTATACACGACTGCATTATCTGTTGCTTGTATTTTACATGTGTACTATAATGTTCTTTAAAAGCATGATTTAAAAAAGCATatactttttaattttagttcACCTTTTCTGGGGTAGTTACTAAACATTCCTGGTATATTCTGGCCTGTGTCAAAGAAAAGCATATCTATAGCTCAAATTTAAAGAACAAGACTATATTAGGATTGCGTGTTCAAAGGGAAAAGTTCTTGGCGACCTAATAAGCTCTTATTTAAAGTTATGGGAAATTCAAGTTTAGTTTTTGCAGTTATTGTACAGTTGGCTCCACTGTGCTGGTTCGGGTTGGTCTGATTGGTCTCGAAGTCATGCTTCAGTTTTGTATAGCATGCACATGGGTATTTCAGAATGCTTTCAAGCTATTACATAAACAATTTTATCAAAAGATAAACAGCCCCTGTTAATCCCCAACTTCTCATTCTGGACAACGTTTTGATGTCTTCAGTGTTCATTGTCTTATTGGTCGATTGTAGACTATTGACAGCTGTTGTATTGTGACTGTTGCACAGTATAAAAcatctaaataaaacattttacacttt

Function

GO:

id name namespace
GO:0006325 chromatin organization biological_process
GO:0021549 cerebellum development biological_process
GO:0006342 chromatin silencing biological_process
GO:0036353 histone H2A-K119 monoubiquitination biological_process
GO:0045814 negative regulation of gene expression, epigenetic biological_process
GO:0000122 negative regulation of transcription by RNA polymerase II biological_process
GO:0060215 primitive hemopoiesis biological_process
GO:0035701 hematopoietic stem cell migration biological_process
GO:0031519 PcG protein complex cellular_component
GO:0035102 PRC1 complex cellular_component
GO:0005634 nucleus cellular_component
GO:0046872 metal ion binding molecular_function
GO:1990841 promoter-specific chromatin binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-224 Predicted to enable promoter-specific chromatin binding activity. Acts upstream of or within cerebellum development; hematopoietic stem cell migration; and primitive hemopoiesis. Predicted to be located in nucleus. Predicted to be part of PRC1 complex. Is expressed in eye; gonad; and midbrain hindbrain boundary. Human ortholog(s) of this gene implicated in acute myeloid leukemia; colorectal carcinoma; and hepatocellular carcinoma. Orthologous to several human genes including COMMD3-BMI1 (COMMD3-BMI1 readthrough).

Ensembl:

ensembl_id ENSDART00000129554

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00045472 lncRNA upstream 842 17256843 ~ 17259487 (+) False XLOC_022870
TCONS_00045473 lncRNA upstream 1674 17257800 ~ 17258655 (+) True XLOC_022870
TCONS_00046958 lncRNA upstream 45332 17200458 ~ 17214997 (+) False XLOC_022869
TCONS_00045469 lncRNA upstream 45870 17209375 ~ 17214459 (+) False XLOC_022869
TCONS_00046957 lncRNA upstream 46554 17200123 ~ 17213775 (+) False XLOC_022869
TCONS_00046803 lncRNA downstream 13605 17280840 ~ 17282535 (+) True XLOC_022873
TCONS_00045479 lncRNA downstream 51286 17318521 ~ 17319849 (+) True XLOC_022874
TCONS_00046959 lncRNA downstream 55251 17322486 ~ 17325645 (+) False XLOC_022875
TCONS_00045480 lncRNA downstream 55409 17322644 ~ 17325645 (+) True XLOC_022875
TCONS_00046960 lncRNA downstream 64931 17332166 ~ 17334612 (+) True XLOC_022876
TCONS_00045471 mRNA upstream 686 17256793 ~ 17259643 (+) False XLOC_022870
TCONS_00045463 mRNA upstream 44017 17145832 ~ 17216312 (+) False XLOC_022869
TCONS_00045464 mRNA upstream 48389 17145977 ~ 17211940 (+) False XLOC_022869
TCONS_00045462 mRNA upstream 79492 17145830 ~ 17180837 (+) False XLOC_022869
TCONS_00045477 mRNA downstream 2614 17269849 ~ 17276770 (+) False XLOC_022872
TCONS_00045478 mRNA downstream 2894 17270129 ~ 17279904 (+) True XLOC_022872
TCONS_00045483 mRNA downstream 67447 17334682 ~ 17341458 (+) False XLOC_022877
TCONS_00045485 mRNA downstream 78286 17345521 ~ 17364454 (+) False XLOC_022878
TCONS_00045486 mRNA downstream 78307 17345542 ~ 17364456 (+) False XLOC_022878
TCONS_00045470 other upstream 45332 17209635 ~ 17214997 (+) True XLOC_022869
TCONS_00045468 other upstream 46554 17209357 ~ 17213775 (+) False XLOC_022869
TCONS_00045465 other upstream 50683 17197223 ~ 17209646 (+) False XLOC_022869
TCONS_00045467 other upstream 50734 17200458 ~ 17209595 (+) False XLOC_022869
TCONS_00045453 other upstream 249247 17005678 ~ 17011082 (+) False XLOC_022867
TCONS_00045481 other downstream 55409 17322644 ~ 17325645 (+) False XLOC_022875
TCONS_00045482 other downstream 67443 17334678 ~ 17337526 (+) False XLOC_022877
TCONS_00045484 other downstream 68283 17335518 ~ 17337959 (+) True XLOC_022877
TCONS_00045488 other downstream 471284 17738519 ~ 17738635 (+) True XLOC_022879
TCONS_00045489 other downstream 810308 18077543 ~ 18077659 (+) True XLOC_022880

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000018_02293913_02296864.mRNA True 1979 mRNA 0.40 9 CI01000018 2293790 ~ 2297763 (+)