RNA id: TCONS_00045482


Basic Information

Item Value
RNA id TCONS_00045482
length 850
RNA type processed_transcript
GC content 0.47
exon number 6
gene id XLOC_022877
representative False

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 17334678 ~ 17341458 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CAAGTTCTTTCGTCACCAGCCAATCACAGCGTGGCAAGTCAGACAAGTTCAAGTAAAGGAGTGGGGAAGCTAAGTGAGAAAAAGAGCATTGAGGGAAAATGCACCATGAAGAAGATTACGCTTCTATTGATTATGTTGCTTGGAGTGACACACTTCATTAAACCACACCGATGCGAAGACGATGCCAAAGATGATTCAGCAGAAGATCTGGGAGAagaggaagatgatgatgatgacgacgatgatgagGATGCAGATGACACTGAAGTAAAGGAAGAGAATGGGGTGCTAGTCCTGACAGATGCAAACTTTGACACCTTCATCGAGGGCAAAGACACCGTATTGGTGGAGTTTTATGCACCATGGTGTGGCCACTGCAAACAGTTTGCTCCCGAGTATGAAAAGATCGCTCAGacgctgaaggaaaatgaccCACCTATTCCAGTGGCAAAGGTTGATGCCACTAAAGCCAGTGGTTTGGGCAGCAGGTTCGAAGTTTCTGGATATCCCACCATCAAAATACTTAAAAAGGGAGAGCCCCTGGACTATGATGGGGATCGGAGTGAGCATGCCATCGTGGAACGGGTTAAAGAAGTTGCCCAACCAGACTGGAAACCTCCTCCAGAGGCTACTCTAGTCTTGACTAAAGACAATTTTGATGATGTGGTGAACAATGCTGACATCATTCTGGTGGAGTTTTATGCACCCTGGTGTGGACACTGTAAGAGACTTGCACCTGAATATGAAAAGGCTGCTAAAGAGCTCAGCAACCGCACTCCTCCTATTCCACTGGCTAAAGTGGATGCCACTGCAGAAAGTGATTTAGCAACACGGTTTGGTGTTTCTGGCT

Function

GO:

id name namespace
GO:0045454 cell redox homeostasis biological_process
GO:0034976 response to endoplasmic reticulum stress biological_process
GO:0006457 protein folding biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0005788 endoplasmic reticulum lumen cellular_component
GO:0009986 cell surface cellular_component
GO:0016853 isomerase activity molecular_function
GO:0003756 protein disulfide isomerase activity molecular_function

KEGG:

id description
ko04141 Protein processing in endoplasmic reticulum
ko04918 Thyroid hormone synthesis
ko05110 Vibrio cholerae infection
ko03110 Chaperones and folding catalysts
ko04131 Membrane trafficking

ZFIN:

id description
ZDB-GENE-030131-5493 Predicted to enable protein disulfide isomerase activity. Predicted to be involved in protein folding and response to endoplasmic reticulum stress. Predicted to be located in endoplasmic reticulum lumen. Predicted to be active in cell surface and endoplasmic reticulum. Orthologous to human PDIA4 (protein disulfide isomerase family A member 4).

Ensembl:

ensembl_id ENSDART00000126435

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00046960 lncRNA upstream 66 17332166 ~ 17334612 (+) True XLOC_022876
TCONS_00046959 lncRNA upstream 9033 17322486 ~ 17325645 (+) False XLOC_022875
TCONS_00045480 lncRNA upstream 9033 17322644 ~ 17325645 (+) True XLOC_022875
TCONS_00045479 lncRNA upstream 14829 17318521 ~ 17319849 (+) True XLOC_022874
TCONS_00046803 lncRNA upstream 52143 17280840 ~ 17282535 (+) True XLOC_022873
TCONS_00046962 lncRNA downstream 1109163 18446689 ~ 18463437 (+) True XLOC_022883
TCONS_00046963 lncRNA downstream 1148143 18485669 ~ 18507866 (+) True XLOC_022884
TCONS_00045498 lncRNA downstream 1381746 18719272 ~ 18723957 (+) True XLOC_022885
TCONS_00046964 lncRNA downstream 1467630 18805156 ~ 18806892 (+) True XLOC_022886
TCONS_00046965 lncRNA downstream 1539207 18876733 ~ 18878980 (+) False XLOC_022887
TCONS_00045478 mRNA upstream 54774 17270129 ~ 17279904 (+) True XLOC_022872
TCONS_00045477 mRNA upstream 57908 17269849 ~ 17276770 (+) False XLOC_022872
TCONS_00045474 mRNA upstream 67443 17260001 ~ 17267235 (+) False XLOC_022871
TCONS_00045485 mRNA downstream 7995 17345521 ~ 17364454 (+) False XLOC_022878
TCONS_00045486 mRNA downstream 8016 17345542 ~ 17364456 (+) False XLOC_022878
TCONS_00045487 mRNA downstream 11651 17349177 ~ 17363490 (+) True XLOC_022878
TCONS_00045490 mRNA downstream 948901 18286427 ~ 18445254 (+) False XLOC_022881
TCONS_00045491 mRNA downstream 961649 18299175 ~ 18376846 (+) False XLOC_022881
TCONS_00045481 other upstream 9033 17322644 ~ 17325645 (+) False XLOC_022875
TCONS_00045470 other upstream 119681 17209635 ~ 17214997 (+) True XLOC_022869
TCONS_00045468 other upstream 120903 17209357 ~ 17213775 (+) False XLOC_022869
TCONS_00045465 other upstream 125032 17197223 ~ 17209646 (+) False XLOC_022869
TCONS_00045467 other upstream 125083 17200458 ~ 17209595 (+) False XLOC_022869
TCONS_00045488 other downstream 400993 17738519 ~ 17738635 (+) True XLOC_022879
TCONS_00045489 other downstream 740017 18077543 ~ 18077659 (+) True XLOC_022880
TCONS_00045493 other downstream 1032176 18369702 ~ 18369817 (+) True XLOC_022882
TCONS_00045533 other downstream 3450642 20788168 ~ 20788284 (+) True XLOC_022903
TCONS_00045551 other downstream 3935086 21272612 ~ 21272728 (+) True XLOC_022912

Expression Profile

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