RNA id: TCONS_00046803


Basic Information

Item Value
RNA id TCONS_00046803
length 336
lncRNA type inter_gene
GC content 0.43
exon number 2
gene id XLOC_022873
representative True

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 17280840 ~ 17282535 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AAGGAATCTCGGAATACGGTAGGCCATGTAGGGAAATGGGGCCTTGTGAGGTATTTTGAGGAATTTGGTAGACATGAAGATTTATTTATCAATTGACATTTTTAGCTCTTCAAGAGAACATTGGATTCAACAACTACAGTTCATTAGAATCATCCCAATGTCAAGAAACTGATCCTCCATTGTGCATCAAGTTGTGTTTCAGCGACGGATGCTTCTCCTCTGAGTTTGTCTTTACTGGGAATGAGATGGGCAGGTTGGCATTGCAAAGCAGCAGAGGGCCTTCTGTTCATAATGCCACTGTAGCTGCTTTGATTGACAGGGTGCAAATTGGAAAGC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00045472 lncRNA upstream 21353 17256843 ~ 17259487 (+) False XLOC_022870
TCONS_00045473 lncRNA upstream 22185 17257800 ~ 17258655 (+) True XLOC_022870
TCONS_00046956 lncRNA upstream 65843 17197223 ~ 17214997 (+) False XLOC_022869
TCONS_00046958 lncRNA upstream 65843 17200458 ~ 17214997 (+) False XLOC_022869
TCONS_00045469 lncRNA upstream 66381 17209375 ~ 17214459 (+) False XLOC_022869
TCONS_00045479 lncRNA downstream 35986 17318521 ~ 17319849 (+) True XLOC_022874
TCONS_00046959 lncRNA downstream 39951 17322486 ~ 17325645 (+) False XLOC_022875
TCONS_00045480 lncRNA downstream 40109 17322644 ~ 17325645 (+) True XLOC_022875
TCONS_00046960 lncRNA downstream 49631 17332166 ~ 17334612 (+) True XLOC_022876
TCONS_00046961 lncRNA downstream 52143 17334678 ~ 17337959 (+) False XLOC_022877
TCONS_00045478 mRNA upstream 936 17270129 ~ 17279904 (+) True XLOC_022872
TCONS_00045477 mRNA upstream 4070 17269849 ~ 17276770 (+) False XLOC_022872
TCONS_00045474 mRNA upstream 13605 17260001 ~ 17267235 (+) False XLOC_022871
TCONS_00045475 mRNA upstream 13605 17260329 ~ 17267235 (+) False XLOC_022871
TCONS_00045476 mRNA upstream 17173 17262879 ~ 17263667 (+) True XLOC_022871
TCONS_00045483 mRNA downstream 52147 17334682 ~ 17341458 (+) False XLOC_022877
TCONS_00045485 mRNA downstream 62986 17345521 ~ 17364454 (+) False XLOC_022878
TCONS_00045486 mRNA downstream 63007 17345542 ~ 17364456 (+) False XLOC_022878
TCONS_00045487 mRNA downstream 66642 17349177 ~ 17363490 (+) True XLOC_022878
TCONS_00045490 mRNA downstream 1003892 18286427 ~ 18445254 (+) False XLOC_022881
TCONS_00045470 other upstream 65843 17209635 ~ 17214997 (+) True XLOC_022869
TCONS_00045468 other upstream 67065 17209357 ~ 17213775 (+) False XLOC_022869
TCONS_00045465 other upstream 71194 17197223 ~ 17209646 (+) False XLOC_022869
TCONS_00045467 other upstream 71245 17200458 ~ 17209595 (+) False XLOC_022869
TCONS_00045453 other upstream 269758 17005678 ~ 17011082 (+) False XLOC_022867
TCONS_00045481 other downstream 40109 17322644 ~ 17325645 (+) False XLOC_022875
TCONS_00045482 other downstream 52143 17334678 ~ 17337526 (+) False XLOC_022877
TCONS_00045484 other downstream 52983 17335518 ~ 17337959 (+) True XLOC_022877
TCONS_00045488 other downstream 455984 17738519 ~ 17738635 (+) True XLOC_022879
TCONS_00045489 other downstream 795008 18077543 ~ 18077659 (+) True XLOC_022880

Expression Profile

//