Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00045476 |
| length | 579 |
| RNA type | mRNA |
| GC content | 0.37 |
| exon number | 3 |
| gene id | XLOC_022871 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007135.7 |
| NCBI id | CM002908.2 |
| chromosome length | 42172926 |
| location | 17260001 ~ 17267235 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0006325 | chromatin organization | biological_process |
| GO:0021549 | cerebellum development | biological_process |
| GO:0006342 | chromatin silencing | biological_process |
| GO:0036353 | histone H2A-K119 monoubiquitination | biological_process |
| GO:0045814 | negative regulation of gene expression, epigenetic | biological_process |
| GO:0000122 | negative regulation of transcription by RNA polymerase II | biological_process |
| GO:0060215 | primitive hemopoiesis | biological_process |
| GO:0035701 | hematopoietic stem cell migration | biological_process |
| GO:0031519 | PcG protein complex | cellular_component |
| GO:0035102 | PRC1 complex | cellular_component |
| GO:0005634 | nucleus | cellular_component |
| GO:0046872 | metal ion binding | molecular_function |
| GO:1990841 | promoter-specific chromatin binding | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-030131-224 | Predicted to enable promoter-specific chromatin binding activity. Acts upstream of or within cerebellum development; hematopoietic stem cell migration; and primitive hemopoiesis. Predicted to be located in nucleus. Predicted to be part of PRC1 complex. Is expressed in eye; gonad; and midbrain hindbrain boundary. Human ortholog(s) of this gene implicated in acute myeloid leukemia; colorectal carcinoma; and hepatocellular carcinoma. Orthologous to several human genes including COMMD3-BMI1 (COMMD3-BMI1 readthrough). |
| ensembl_id | ENSDART00000145949 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00045472 | lncRNA | upstream | 3392 | 17256843 ~ 17259487 (+) | False | XLOC_022870 |
| TCONS_00045473 | lncRNA | upstream | 4224 | 17257800 ~ 17258655 (+) | True | XLOC_022870 |
| TCONS_00046958 | lncRNA | upstream | 47882 | 17200458 ~ 17214997 (+) | False | XLOC_022869 |
| TCONS_00045469 | lncRNA | upstream | 48420 | 17209375 ~ 17214459 (+) | False | XLOC_022869 |
| TCONS_00046957 | lncRNA | upstream | 49104 | 17200123 ~ 17213775 (+) | False | XLOC_022869 |
| TCONS_00046803 | lncRNA | downstream | 17173 | 17280840 ~ 17282535 (+) | True | XLOC_022873 |
| TCONS_00045479 | lncRNA | downstream | 54854 | 17318521 ~ 17319849 (+) | True | XLOC_022874 |
| TCONS_00046959 | lncRNA | downstream | 58819 | 17322486 ~ 17325645 (+) | False | XLOC_022875 |
| TCONS_00045480 | lncRNA | downstream | 58977 | 17322644 ~ 17325645 (+) | True | XLOC_022875 |
| TCONS_00046960 | lncRNA | downstream | 68499 | 17332166 ~ 17334612 (+) | True | XLOC_022876 |
| TCONS_00045471 | mRNA | upstream | 3236 | 17256793 ~ 17259643 (+) | False | XLOC_022870 |
| TCONS_00045463 | mRNA | upstream | 46567 | 17145832 ~ 17216312 (+) | False | XLOC_022869 |
| TCONS_00045464 | mRNA | upstream | 50939 | 17145977 ~ 17211940 (+) | False | XLOC_022869 |
| TCONS_00045462 | mRNA | upstream | 82042 | 17145830 ~ 17180837 (+) | False | XLOC_022869 |
| TCONS_00045477 | mRNA | downstream | 6182 | 17269849 ~ 17276770 (+) | False | XLOC_022872 |
| TCONS_00045478 | mRNA | downstream | 6462 | 17270129 ~ 17279904 (+) | True | XLOC_022872 |
| TCONS_00045483 | mRNA | downstream | 71015 | 17334682 ~ 17341458 (+) | False | XLOC_022877 |
| TCONS_00045485 | mRNA | downstream | 81854 | 17345521 ~ 17364454 (+) | False | XLOC_022878 |
| TCONS_00045486 | mRNA | downstream | 81875 | 17345542 ~ 17364456 (+) | False | XLOC_022878 |
| TCONS_00045470 | other | upstream | 47882 | 17209635 ~ 17214997 (+) | True | XLOC_022869 |
| TCONS_00045468 | other | upstream | 49104 | 17209357 ~ 17213775 (+) | False | XLOC_022869 |
| TCONS_00045465 | other | upstream | 53233 | 17197223 ~ 17209646 (+) | False | XLOC_022869 |
| TCONS_00045467 | other | upstream | 53284 | 17200458 ~ 17209595 (+) | False | XLOC_022869 |
| TCONS_00045453 | other | upstream | 251797 | 17005678 ~ 17011082 (+) | False | XLOC_022867 |
| TCONS_00045481 | other | downstream | 58977 | 17322644 ~ 17325645 (+) | False | XLOC_022875 |
| TCONS_00045482 | other | downstream | 71011 | 17334678 ~ 17337526 (+) | False | XLOC_022877 |
| TCONS_00045484 | other | downstream | 71851 | 17335518 ~ 17337959 (+) | True | XLOC_022877 |
| TCONS_00045488 | other | downstream | 474852 | 17738519 ~ 17738635 (+) | True | XLOC_022879 |
| TCONS_00045489 | other | downstream | 813876 | 18077543 ~ 18077659 (+) | True | XLOC_022880 |
