RNA id: TCONS_00045462


Basic Information

Item Value
RNA id TCONS_00045462
length 4589
RNA type mRNA
GC content 0.43
exon number 8
gene id XLOC_022869
representative False

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 17140938 ~ 17216312 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CGGGGTTTATGCGTTCAACAACAGCGTAACTGAAATATGGAATTTAATGGAAATGGGACTTAAAATACTGCTTTCATGGGAGATAGGGATTCGTGAGACAAACGCCCGACTGCCTTTTTGTTGGTCTTTGTGCGCTGCTGATGGTAGATGGTCTCCAGCGAGCTGTATCTGGCAGAAGAAGACGACGATTCGCCAAGTAATATGAAGGAGATGATCGGAGGCTGCTGCGTCTGCTCGGATGAGAGAGGCTGGGCCGAAAATCCCCTAGTCTACTGCGACGGCCACGGCTGTAACGTTGCCGTCCACCAAGCCTGCTATGGAATTGTCCAGGTCCCCACAGGCCCTTGGTTCTGCAGGAAATGTGAATCACAGGAACGTGCTGCCAGGGTGAGGTGCGAGCTGTGTCCCCAGAAAGACGGAGCACTGAAACGGACAGATAATGGAGGTTGGGCCCATGTGGTTTGCGCTCTTTACATCCCAGAAGTGGAGTTCGCCAATGTATCCACCATGGAGCCCATTGTGCTTCAGTCTGTCCCCCATGAACGTTATAACAAGACATGCTACATCTGTGAGGAACAGGGTCGTGAGAGCAAAGCTGCTACTGGAGCCTGCATGACATGCAATAAACATGGCTGCAGACAGGCCTTTCATGTCACATGCGCTCAGTTAGCTGGGTTGTTGTGTGAAGAACAGGGTTCAGATGCTGATAATGTGAAATACTGTGGATACTGCAAGTACCATTACAACAAACTGAAGCATAAAGAAAGAGATCGGCATAAACCAAAGCACAAAAAGCCTTTGGAACTGTCGCCTTCCCTGGTGCCAGCGCTGATGGTGACACCTGAAAAGAGttacaacaacagcagcagtggCGGAAGTGTGTCGTCCATCTCCTCCACTCAGAAGCGACTGGACGACAGCGGAGCCCGTTTCACCAATGCCAACTTTCAGGAAGTTCCACCTCACTCCAGTTCCAGTTCCAAAGATGGTGGCTCCTCTGATGGCAAGAGCTCGGACAGCAAAAGCAAGAAATCCAGTCACAGCACTAGCTCAAGCTCGGGTTCACGGGGTCGCAAATCTGTGGCAGGCAAACCCCACGGCCCTGTGGTCACCACAGCTACTTCATCCACGGCCCCTTCCTCAACAAGTCCTTTTCAGCAAGGTGAGGCTTCCAAACATGCCAACTTCACTTCATCAACAATCTGAAATGAAATTAGTAAACACCCTCTCCATGTTTCTAAATAGACTGAAACAGCCAGATTCAGGTCTCTTAGAGTGAGTCTGTTGTGACATGGCTGGATGGAAGCCAGGAGTTGTAAGCTTGGCGTGTGTGTGCGATAAGGCTGTCGTCTGGCTGGCTGCTGCTGTAATGCAGATCGGCGGGTCTTTCCGAGTCGGCTAAACCTTGGGTGGCgtctcttgtgtgtgtgtttatgtgtgttatGAGGGAGGTTTGGGAGTCAGAAAAGAAGCATGTTCCTTTCCTTTCTCATATCAAGCCATGATGGAGGGATTGAAGCAGAGGTCACGTCTGGAAAATTCAGACTAATCATTAATGTGTCAAAGTGCACAGGGGCCTCCTCTCTGGAGTTACATGCAAACTTCAAGGAACCATTagctgcatttccactatcggaccagtgcgagccagggctttaatcgggccggggcgggccaatagcccgggaggttgagaaatgaggctgaaatcatgtcgcgtttccactgtcgggctaaagctcacagcgcgtcacgcaaacaccgcccacagaacgtccccgaatcaaacgtcacacaacccgcccacttcagcgggaatgaggcagataaagcacaccatagaatcatcacgaaacgaaaccattaaaatgaagacaaccgaaacaaacaaacgacacgttactgtaaagcagtacattatatgtctgtaagcacagacctgtgtatttccattcattacatttgtttactcgccgaccgactgcatTGTGCAtggagtgctctcgccactaacgcagggacccaacacagagagcgcacacatccataatataacagaaattctcctttataactcgatatggcatgtataTTTTAACATCCTCGTGttgatagaagtcgtgttaagttttcagcacaagagcgagaagcctaataaaatatagccatatttgttgcgctcggcagctattcactaaaactcctcatttaaagtttcatttataaatttaaccacgtcatataaaaacataaacagttgtttgaggatatagaacacattttgtgtttagactttcccccatatgcgtttaaagcagcgagtgctgcgcaggactgagtgacagaaaaaaaggtataggagattctgctttcactcacccaaataatgctctgtttgcgcgatttgattaatatcatcgtatccaaatactttataaatatttacttatataaatatttactttatataaatatttcaaaccttctccggtgtttattgtttttaaaaaatatcgaaaatcttttttttttttcagacaggtctttgcaaaatgaaagttaggctatatgtggctttaaaacggtttgatttatgtattgtatataggctacctacattgttatagttagcttttgtttattttatattggttaatttatttaatgtgattttatatatatccggtatttgtaattctttaaattatatttcaatataccttaggctattttatcaagatatgacaatatattgtttaaagtctacgaaagtgggcacgtattttgttaagtttatgtctttctgttgtatttatatgtgtattatctccaaaataaataaagaaaaaagccgctcgcggctaGAGCAGTGAAGGAGCGcttttgcccggtctcacacacatacaggcatctaaacgtgcacaaacaaacaaacattttaaacttgacaaaaactctcgaaaacctttactgtctgatgtgtttttaatatggtgtaaagattattatgcgttatttaaacataaaggaggacgcagcaaagaacgtcactataaattaaaactactttattatacgcaaaaagaccccagactataaggctaaatgttttctttcccttatttctttatttgtttggcgcatgtactcatgtgcgatcagaaaactgcccgcctctcctttcactccaccccgaagccccagctggccctccttggcccaaggtattcggcgggccgaaaaaggccggccgctggccccaagaaagccccgctttggcccgattaggccccggaagtgacagtggaaaccccactggccttggctcgccctggctcgctcgctttaggcgcgatagtggaaacgcggctattgaagGAGGAACAATGCCTTGTTTTCTCAGCAATGAGATCAAAAGATGTTGAAGATTAACCATGGAGTCTGTAAGAATGTCATATTGTCTTGGCTGTTTTGACAACACCTGACACAGACGTGGGGTCGATGAGCCACTCAGCAGTTCAGTTTGGCCACCATGGTGTAATATTCCAAGTATATGAGAGATTGCAATCTTATTAAATTGAGCCCTTTGCGTTTGACAATAACAGTGGGGTGTAGGACTATGTAGAGCTTATTTTCCATAATGGTGCACATGCGAATCTTCTTGTTGACATAAGAAAAGATATAAAAAGTAATATTGTTTGAGGCAGGATTTAAGATTTTTAGTCAAGTCGTCTTATCTTCAGGCATTAAATGGACAGTGATGCTTAATCTAGGATCCAGCGATAAGGTGCAGCCAAACTTCCTGGATGCGTTTTGGAAAGAATACAAAATGCGTTAGTTATCTTGTGCAGTCGTCAGACCAGTTGTTTTTGTGATATGGTTTATCTTTGAGAAATGTTAACTGGCCTCCTCTGCTTTGTGCATGTTTGAATGTTAGTGGGAGGCTTACAGGATAAATGATGTAGTAATATTGGGAAGTAAAGCCTCAGCAGCCTCCTACAACAGCTGTAAAAACATGGAGGGTTTCTCTGGCATTGGTTAAAGGACGAGTCCTTCCCTGAGGGGAGGGCTTGAATGAACACCTAGATCTGGGTCACCCTTCTTGTCTGCTTGCATACCTGATTGTTTGGATTCCTGCAAGTTTGTCTGGTCCAACTTGGAGTGGGAGatgatgactgactgactggttttAGGTTGGGTTGTTTCTTTGTTGCTTTTTTGAAgatttttgccttttttaaattttttcaataattctaattttaagttttatttattgtcattaataAATTGAATgggctttctttaaaaaaaaaagtcttgtctaGATGAAATGATGTTGGTTTTTGAAAGACCTGTGGGGTTTTTTGTTTACCTTTGTTTAAATAACTTTTGAcctatttattaatcaatctagGGAAAAAAAGGTTTTCATGAAAATATTTGACAGCACAAAGGTTTTGAGCTTTTCAGTTATGAAAAATGATTATGTTGTCTTTTGTAGTATGTCAGAAAATGTACAGAGTTTGATATTAGTGAATGTTTGTGTACAGGATTTCAACCTGTTAATAAAGTTGTTCAGTTCAGTG

Function

GO:

id name namespace
GO:0060070 canonical Wnt signaling pathway biological_process
GO:0060729 intestinal epithelial structure maintenance biological_process
GO:0045944 positive regulation of transcription by RNA polymerase II biological_process
GO:0019725 cellular homeostasis biological_process
GO:0005634 nucleus cellular_component
GO:0031491 nucleosome binding molecular_function
GO:0042393 histone binding molecular_function
GO:0046872 metal ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-041114-176 Predicted to enable histone binding activity and nucleosome binding activity. Acts upstream of or within canonical Wnt signaling pathway and intestinal epithelial structure maintenance. Predicted to be active in nucleus. Is expressed in brain; hindbrain; intestine; and midbrain. Human ortholog(s) of this gene implicated in acute monocytic leukemia and acute myeloid leukemia. Orthologous to human MLLT10 (MLLT10 histone lysine methyltransferase DOT1L cofactor).

Ensembl:

ensembl_id ENSDART00000148756

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00046954 lncRNA upstream 243969 16719606 ~ 16901861 (+) False XLOC_022863
TCONS_00046953 lncRNA upstream 243969 16719606 ~ 16901861 (+) False XLOC_022863
TCONS_00045445 lncRNA upstream 245618 16726748 ~ 16900212 (+) True XLOC_022863
TCONS_00045438 lncRNA upstream 936830 16207562 ~ 16209000 (+) False XLOC_022861
TCONS_00045439 lncRNA upstream 937223 16207563 ~ 16208607 (+) True XLOC_022861
TCONS_00046955 lncRNA downstream 16386 17197223 ~ 17213775 (+) False XLOC_022869
TCONS_00046956 lncRNA downstream 16386 17197223 ~ 17214997 (+) False XLOC_022869
TCONS_00045466 lncRNA downstream 19286 17200123 ~ 17209579 (+) False XLOC_022869
TCONS_00046957 lncRNA downstream 19286 17200123 ~ 17213775 (+) False XLOC_022869
TCONS_00046958 lncRNA downstream 19621 17200458 ~ 17214997 (+) False XLOC_022869
TCONS_00045455 mRNA upstream 17997 17068724 ~ 17127833 (+) False XLOC_022868
TCONS_00045456 mRNA upstream 18833 17069420 ~ 17126997 (+) True XLOC_022868
TCONS_00045454 mRNA upstream 122153 17007407 ~ 17023677 (+) True XLOC_022867
TCONS_00045452 mRNA upstream 124377 17005647 ~ 17021453 (+) False XLOC_022867
TCONS_00045450 mRNA upstream 142880 16983329 ~ 17002950 (+) False XLOC_022866
TCONS_00045471 mRNA downstream 75956 17256793 ~ 17259643 (+) False XLOC_022870
TCONS_00045474 mRNA downstream 79164 17260001 ~ 17267235 (+) False XLOC_022871
TCONS_00045475 mRNA downstream 79492 17260329 ~ 17267235 (+) False XLOC_022871
TCONS_00045476 mRNA downstream 82042 17262879 ~ 17263667 (+) True XLOC_022871
TCONS_00045477 mRNA downstream 89012 17269849 ~ 17276770 (+) False XLOC_022872
TCONS_00045453 other upstream 134748 17005678 ~ 17011082 (+) False XLOC_022867
TCONS_00045449 other upstream 160291 16983303 ~ 16985539 (+) False XLOC_022866
TCONS_00045446 other upstream 338182 16807521 ~ 16807648 (+) True XLOC_022864
TCONS_00045443 other upstream 595281 16393527 ~ 16550549 (+) False XLOC_022862
TCONS_00045423 other upstream 1732725 15412989 ~ 15413105 (+) True XLOC_022853
TCONS_00045465 other downstream 16386 17197223 ~ 17209646 (+) False XLOC_022869
TCONS_00045467 other downstream 19621 17200458 ~ 17209595 (+) False XLOC_022869
TCONS_00045468 other downstream 28520 17209357 ~ 17213775 (+) False XLOC_022869
TCONS_00045470 other downstream 28798 17209635 ~ 17214997 (+) True XLOC_022869
TCONS_00045481 other downstream 141807 17322644 ~ 17325645 (+) False XLOC_022875

Expression Profile

//