RNA id: TCONS_00045456


Basic Information

Item Value
RNA id TCONS_00045456
length 4252
RNA type mRNA
GC content 0.42
exon number 10
gene id XLOC_022868
representative True

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 17068724 ~ 17127833 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTGTTTTAGCGCATTTGGCGAGTTATTCTTCTGTCTAGAGAGCTAATAGTTGAGTTGGTACAGCTAGCTGGCTGCGGTTAGCTAACTGAACGTTATgccaaattatattttactaagaGACAGTTAGGACACCACTAGCTTAATTAAAGCACTTGTCACTGTGTGATAGTTAATTTATTGTTATACAACAAACAATGGCCTCGGCTAGTAACACTGTCTCATCGTTTGCGAGCAAAACAAAAACGAAGAAGAAACACTTCGTGGCTCAGAAAGTGAAGCTGTTTCGTGCCAGCGACCCTCTGCTCAGTGTTCTCATGTGGGGAATTAACCATTCGATAAACGAGTTGAGCCATGTTCAAATCCCCATCATGCTTATGCCTGATGACTTCAAAGCCTACTCGAAGATTAAGGTGGACAATCACCTATTCAACAAAGAGAATATGCCAAGCCATTTTAAGTTCAAGGAGTATTGTCCTCTTGTTTTCCGTAATTTGAGAGAGAGGTTCGTCATCGATGATCAGGACTTCCAGAACTCTCTGACCCGCAGTGCACCACTCGTCAGTGAAGCTCAGGGCCGAAGTGGTGCACGCTTTCATACCTCCTACGACAAGAGGTACGTTATCAAGACCATTAGCAGCGAGGATGTGGCCGAGATGCACAACATTCTCAAGAAATACCACCAGTATATTGTGGAATGTCATGGATCCACACTGTTGCCACAGTTTCTAGGCATGTACCGCCTCACTGTAGATGGAGACGAGACTTATATGATTGTCACTCGCAACGTGTTCAGCCACCGGTTGTCTGTGTATAAGAAATATGACCTGAAGGGTTCTACAGTTGCCAGAGAGGCTAGTGACAAAGAAAAGGCTAAAGAACTGCCTACGTACAAAGACAATGACTTTATCAACGACGGACAGAAAATATACATCGATGACGAGAGCAAGAAAATCTTCCTCAATAAGCTTCAAAAGGATGTGGAGTTCCTAGCCTTGTTGAAGTTGATGGACTACAGCCTGCTGGTTGGGATCCATGACGTTGAGAGGGCAGAACAAGAGGAAGTAGAGAGCGAGGATAATGAGGGAGAGGAGGAAGGAGAGAGTGATGGAGGGATTGTGGGCACTCCTCCTGACAGTCCCAGTAACACTCTGGACAGCACTAAACCACTCTCGCCGGGAGATTTCGACCCCAATATTGACGTCTATGCCATCAAAAGCCATGACAATTCTCCAAGAAAGGAGGTCTATTTTATGGCTGTTATCGACATCCTCCAGCATTATGATGCCAAGAAAAAGGCTGCCCATGCAGCCAAGACAGTAAAACATGGGGCCGGGGCAGAGATCTCCACAGTGAACCCAGAGCAGTACTCGAAGAGATTCTATGATTTCATCACTACCATCCTGCCCTAGTCTGAAACAGCTGAGTCCACTGGGGGGATGAAGAGAGGGACGCCAGCAGAGGGGTGCTGAAAACCTGCTCTGCCACAGGGGGGCACCCCTACCGCAGCTACAACCaccatttgtttacattttgatttcatttatttgttctttgtttttgtGGGACCATGAGAGTGATGGAAAAGGACAACAGTAGAactgttttttttggggggggggggggggggggggttgggctTTTTTAACTGCTTTCTTATGCATGCCCCTTAttctcatttttttgtttgttccaaTTTGATATTTTTCTTGCCTTTTAAATTGCAAGAGGACGGATGGTGAGACTAAAGAGAGCCCATGTGATGGTCTGTGGCACAGTTGGTAGAAGAAAAAAAGAGGCCAAAACCAAACGTTGGTCTCTCACTGAATCTTCCATCATCACACACTTTGTTCATCAAATTCTAACACTCGGCTGCCGATTAGCTTTTTCCACCAGTTTTGTGGACACCCACAGCAAATACTCGCTAACTTTCTTTGCTCTCAGTTCTCTTCTTGCTCTGGACAGAGTAACCAGAAACACTCTTTGAGCCATTTACAAAAGGATGACCCATCACCCCCCCACTTGCCTTGTGTGGACAGACATGAATCTGTTATGCATGTTCCTTCAGTGTTCTGAGGCGAAGGTTCTGGtaggtatttagtttttttgtgtttattatttttgtttgtttgtttggttctgCAGCAACTTGACAGGAGGGAGAATGAAGACACTGAGGCAGCAGGATCGATCAGTGCTTTTGCTTTGGTCATCAGTGAATTCTGTTACATTAGTGATTCAGTTGCCATCAGCACCTTAAACTGTTGCACTTTTTCTTAGGATCACTCGGTCTGTTACGAGCTGCAACGATAGCACTATGAGGCACTGTTCAACGCAGCCTTGCCATTTCACGTGTTCTCGCGCATACGCTTGTTCTCAGCAGACAAAACATAGTTTACCTCTCGCATCGTACCAGGACACACCGTTTAGTTGTGTTTCAGTATTCCATTGAGGTTTGGGGAAGGGGtgctttgtgtatttttttttctgtctttttaaaaCATTGGTTGTGTTTGAATTTGTGTGTGTCTTTTGTTCGCAGTTCTTTTGAACGTTCAAATTGGCAGCAAAAGATGAACTGATTTTGCACATGATGAATGGAACCAAAATGTTCACGGAGTTTGTTGGTTCTGCAGTGGTATTTACAAGGGAAATTTAATACATGTAACAGGAGAATACTTTTGTAAACGGCATTGAATTAGAAGCAGGTAATATGACTTAGAGATTAACATTTGTTTCTTAACTTTTCTAATTGAAAGAGAGAAAACGCCTCGTGTTTCTGTTGGTCACTTGCACATATTTTACATTCAATTTTAATTAAGCACCACTCTGTGATTCGCTCAAAGTGTTCTGAGAAATGAAGAATGTtactattttaattcattcagcaCAAGTACTGTCTACAaatgaaaaagaggaaaaatgcATGTTGCATTATTTTAGTATTCAGTCTGGACGTGTCCAGAGATGGTCTATATTCCATGCTTTTCCGCCCCTTGCCCTAATCCCCAACCCCAggtctatttttgttttttaagatggTTCCATACCTGCTTTATACTGTGTTTTCAATGTATACACTGTGCAAGAGTCGTGCCTTTTTACTCCAAATTATTTAATTctgtattttttaatcttttttttcaaacagaagtaaaatgttattttctaatatttaggGGTGGTTGAAAAAATAATCCtgatattttcagtgttttttttttttcgtttttttttctcctctgatGTTTTGATGTTTCTTCTGATGCTGTTGCTTCAAACGGGACACAAGACATTACACGTTCTGTTCACAACACAGCAGCACTGAAAATGGTCACAATTTCTCCTTGACTGGCTAATTCTATGTGCAAAGCCTTTTGGACAAGAGTGTGCATTGTGAATTTGTTGATATGAGTAGGTGTGGCTCTTGTTATAGTGTTAATTGTAAATTGTGTTCAGGCTTTCTCGACGCATTTTTATCTGGAAGTATTATACGGCACCAATGTTACGGCGTCCTTGGTTAGTGTTTCATTTTCTTAATAAACTGAGCGCTGCTTGTGCCCTTGGGAAGCCATTGCACAGTGGGGGAAAAATAACCCTTTTTATTGTTCTCATTGGGAAGAAAACAAACCCTGGTCTTCTTGGTTGTATTAatcacaacagaaaaaaaaaacaaatctcatAAACTTGGGCATGACAAAAGAGGCTGTTTTAGCATCAAGACTTTGATAGTGTCGTCAGAGCATCGCTTCAGCTTCTGATACTGGATCCACACGCAGAGATATATATGTGAATTTCACTTAATGTGAAAAGTGCTACAGTCAGATACAGCTTCACGCCTTCTCAGAAAGCCCTCCACTTTGTTCTTCGTTTGCCAAAAGCATTCTTTGCTCAATGTGTTCGCTGATGGATAACTCATCGCGTAAGCTTTGGGAAAAATGTAATGTACTTTTTAGCAATTCGATTTTTACTTTCTAAACATTTACGAATATCGCTAGCGGATGGGTTGTGTTTTGGATATGCAGGTTTACACGCGTGTCGAAACAAATAAAGAACAATCACATCGTCTGTGACTCTATCTAAATGGGGAAGGTAACAGGAGTGAAGGGGAAGCGCTGCATCATCACACTCACAGAAATGAGTCTAAAATCTTGAGAGTAACCAAAGGGGAGGCTGTCTCATGTGTTATGATGTAAAACGATATACACTCCATTCCATAAGCATTGCTCAAAACAATAAAGCACTTTGTCTGCGA

Function

GO:

id name namespace
GO:0048634 regulation of muscle organ development biological_process
GO:0016310 phosphorylation biological_process
GO:0046488 phosphatidylinositol metabolic process biological_process
GO:0005575 cellular_component cellular_component
GO:0016740 transferase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0016301 kinase activity molecular_function
GO:0016307 phosphatidylinositol phosphate kinase activity molecular_function
GO:0016308 1-phosphatidylinositol-4-phosphate 5-kinase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-080721-18 Enables 1-phosphatidylinositol-4-phosphate 5-kinase activity. Acts upstream of or within regulation of muscle organ development. Is expressed in brain; central nervous system; eye; pectoral fin; and somite. Orthologous to human PIP4K2A (phosphatidylinositol-5-phosphate 4-kinase type 2 alpha).

Ensembl:

ensembl_id ENSDART00000014787

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00046954 lncRNA upstream 167559 16719606 ~ 16901861 (+) False XLOC_022863
TCONS_00046953 lncRNA upstream 167559 16719606 ~ 16901861 (+) False XLOC_022863
TCONS_00045445 lncRNA upstream 169208 16726748 ~ 16900212 (+) True XLOC_022863
TCONS_00045438 lncRNA upstream 860420 16207562 ~ 16209000 (+) False XLOC_022861
TCONS_00045439 lncRNA upstream 860813 16207563 ~ 16208607 (+) True XLOC_022861
TCONS_00046955 lncRNA downstream 70226 17197223 ~ 17213775 (+) False XLOC_022869
TCONS_00046956 lncRNA downstream 70226 17197223 ~ 17214997 (+) False XLOC_022869
TCONS_00045466 lncRNA downstream 73126 17200123 ~ 17209579 (+) False XLOC_022869
TCONS_00046957 lncRNA downstream 73126 17200123 ~ 17213775 (+) False XLOC_022869
TCONS_00046958 lncRNA downstream 73461 17200458 ~ 17214997 (+) False XLOC_022869
TCONS_00045454 mRNA upstream 45743 17007407 ~ 17023677 (+) True XLOC_022867
TCONS_00045452 mRNA upstream 47967 17005647 ~ 17021453 (+) False XLOC_022867
TCONS_00045450 mRNA upstream 66470 16983329 ~ 17002950 (+) False XLOC_022866
TCONS_00045451 mRNA upstream 66780 16985181 ~ 17002640 (+) True XLOC_022866
TCONS_00045448 mRNA upstream 76904 16983269 ~ 16992516 (+) False XLOC_022866
TCONS_00045457 mRNA downstream 13941 17140938 ~ 17216064 (+) False XLOC_022869
TCONS_00045460 mRNA downstream 15884 17142881 ~ 17211940 (+) False XLOC_022869
TCONS_00045459 mRNA downstream 15884 17142881 ~ 17211940 (+) False XLOC_022869
TCONS_00045458 mRNA downstream 15884 17142881 ~ 17211940 (+) False XLOC_022869
TCONS_00045462 mRNA downstream 18833 17145830 ~ 17180837 (+) False XLOC_022869
TCONS_00045453 other upstream 58338 17005678 ~ 17011082 (+) False XLOC_022867
TCONS_00045449 other upstream 83881 16983303 ~ 16985539 (+) False XLOC_022866
TCONS_00045446 other upstream 261772 16807521 ~ 16807648 (+) True XLOC_022864
TCONS_00045443 other upstream 518871 16393527 ~ 16550549 (+) False XLOC_022862
TCONS_00045423 other upstream 1656315 15412989 ~ 15413105 (+) True XLOC_022853
TCONS_00045465 other downstream 70226 17197223 ~ 17209646 (+) False XLOC_022869
TCONS_00045467 other downstream 73461 17200458 ~ 17209595 (+) False XLOC_022869
TCONS_00045468 other downstream 82360 17209357 ~ 17213775 (+) False XLOC_022869
TCONS_00045470 other downstream 82638 17209635 ~ 17214997 (+) True XLOC_022869
TCONS_00045481 other downstream 195647 17322644 ~ 17325645 (+) False XLOC_022875

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000018_02150486_02181595.mRNA True 909 mRNA 0.46 8 CI01000018 2150486 ~ 2181619 (+)