RNA id: TCONS_00045459


Basic Information

Item Value
RNA id TCONS_00045459
length 3156
RNA type mRNA
GC content 0.55
exon number 19
gene id XLOC_022869
representative False

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 17140938 ~ 17216312 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGTGCGCTTACTTTTCGCAAAGGATCGTGAGCTCTAAGTTTGATGAAGAAGATTCTTACTTTAGAGAGTGTGAGATGGTCTCCAGCGAGCTGTATCTGGCAGAAGAAGACGACGATTCGCCAAGTAATATGAAGGAGATGATCGGAGGCTGCTGCGTCTGCTCGGATGAGAGAGGCTGGGCCGAAAATCCCCTAGTCTACTGCGACGGCCACGGCTGTAACGTTGCCGTCCACCAAGCCTGCTATGGAATTGTCCAGGTCCCCACAGGCCCTTGGTTCTGCAGGAAATGTGAATCACAGGAACGTGCTGCCAGGGTGATTAAAGGGTGGAGGGGGAGAAAGCCGAGCTGGCAGACCCCTGAAGGAGGAGGACAGTCCACCACCTGTAACAAAGAGGAGGAGGACAGCAGACTGAGCAGAAGTTTAAAAACTTTGAACATAGTGAGGTGCGAGCTGTGTCCCCAGAAAGACGGAGCACTGAAACGGACAGATAATGGAGGTTGGGCCCATGTGGTTTGCGCTCTTTACATCCCAGAAGTGGAGTTCGCCAATGTATCCACCATGGAGCCCATTGTGCTTCAGTCTGTCCCCCATGAACGTTATAACAAGACATGCTACATCTGTGAGGAACAGGGTCGTGAGAGCAAAGCTGCTACTGGAGCCTGCATGACATGCAATAAACATGGCTGCAGACAGGCCTTTCATGTCACATGCGCTCAGTTAGCTGGGTTGTTGTGTGAAGAACAGGGTTCAGATGCTGATAATGTGAAATACTGTGGATACTGCAAGTACCATTACAACAAACTGAAGCATAAAGAAAGAGATCGGCATAAACCAAAGCACAAAAAGCCTTTGGAACTGTCGCCTTCCCTGGTGCCAGCGCTGATGGTGACACCTGAAAAGAGttacaacaacagcagcagtggCGGAAGTGTGTCGTCCATCTCCTCCACTCAGAAGCGACTGGACGACAGCGGAGCCCGTTTCACCAATGCCAACTTTCAGGAAGTTCCACCTCACTCCAGTTCCAGTTCCAAAGATGGTGGCTCCTCTGATGGCAAGAGCTCGGACAGCAAAAGCAAGAAATCCAGTCACAGCACTAGCTCAAGCTCGGGTTCACGGGGTCGCAAATCTGTGGCAGGCAAACCCCACGGCCCTGTGGTCACCACAGCTACTTCATCCACGGCCCCTTCCTCAACAAGTCCTTTTCAGCAAGGTCATTTATTAGgaagcaacagcagcagcaaatCAGCCACCAGTGGGTCTGTGGTTCAGCCCACGTCTGATTTCCTCAGCTTCTCTGATCCCAGCCTAAGGGCTGGCGACTCGTACACACCTCCATCCTTTGGCCGCTGCCACATGAAGGGTGGTGCAGAAAGCGGAGCTTCTGAAAGCATGGTTGCTCTCAACACCTTCAGCATGATACCTCTTTCCCAAAGCTCAAGCTCCAGCTCCAGCAAGCATTATGAAAACTGTCACACGACTGGGGAGCTGGGCAGCCTGGCCTCAGCCAGCTACAAACGACCACAGCCCTCCTCGTCCTCTTCTTCTGCAACATCCTCTTCATCTACTGGCGAGGATGGAGTAAAGAAGAAAAAGAGAGGGAACTGGAGGAACCGATATGGACCTTGCTTCACCACCCAGGACAGTAAAACCACTGATGCGGGAGAGCACATATCCACAATGCCCTCATCCACTTCCCCTTCGCCATCCTCTATGAGTAACATGGTCTGCCGCGGGAGCACTGTCAGCAGTACTGCAAGTGTAGGAGCAGTGGGTGCTGGTACCAGTAGTCTGGGGATTCAAAAGTCCCCGTCCCTCCTCAGGAATGGAAGCTTACAGGGTATGACTGTCAGCTCCCCACCTGCCGTACCAGGGTCGTACCCCAGCAGCAGTGATGTTGCCTGTCCTTTGCCCAGCGCCGTGCTCGGAGGGTCTATGTCCGCCTCAAACTCTGAGTTGCCGGCTCATCAGTCAGTTGTTGTCACTTCTATGCCCACACTGACGTCACTGCCCTCGGCCGCCCCGTTCACAAGCACCCCATCCACACACGCAAACTCGCTACCGGGATCCTTTAACCTGGCACCATCCCATATGTTCGGAAACCGACTGAATCCTAACTCCGCCATGGCTGCACTGATCGCTCAGTCCGAGGGCTCCCCAGCAGATCAGGAGCTGGGAGACGGAGCTCTCGGCTTCTCCAGAAGAGGAAACTCACCAAAGACAAACCTCTCCCCTCGGTCTCCGCTGAGTGGGCTTCATATACGGTATGACGCAGGACCTATGGTTCCAGGGCTCGGGTCTGGTTCGGATACGCTGCCCCCTGCGGCCACCAGCATTGACCAGCTGCTGGAACGCCAGTGGAATGAAGGACAGCAGTTTCTTCTACAACAGGGTTCACAAGGAGATGTTCTGGCAATGCTGAAGTCCCTGCACCAGCTGCAGGTGGAAAACCGGCGCCTGGAGGAGCAAATCCGAACTCTCACCATGAAGAAGGAACGACTGCAGCTCTTGAGCGCTCAACTCTCTGTGCCTTTCACCCCTGCAAGCACCACGGCCACCACTGCCTCCTCTCCAATGTACCCCAGCAACACTCACACAGACATGCTGCACAGCAAGAGCATTCAGCTAGGCAGTGTTTTAACAGAGTCCTCTCAACCCTTGCCCACTCAGGATCCCCAGTCTGGTGGCCATAGTAGCGGAAGCAGCACGTCGTCTCTCTCCACCCCTCCGTCTGCAGCCCACAGCCCGCCCCAGCAGCAGGTGAACGGAGTCGGCATGGCCGGGGTGCCTGTCCAGCCTGGCAATGCCAACTCGTCCCTGCCTGCCATAGCCGGGGTGACGGGTCTGATGGGCGCTCTGCAGGGCAACCACCTGGCCATGAGTGGCATCGTGGGCGCCTTAAACGGAGTAATCCAAACCTCCCAGTCCAGCCTGACCCAGAACAGCAGTCCCCTGCCCCAATCAGCAACAGCTTCCAGCGCATCTCTGTCCATGTCCAGCTCTCTCACTAACAGGCTTTTCACTGAACAACACCGGCAGATTCTCCTCCATCAGCATCAACTACAGCAGCTTTTCGGCTCCCAGCAGCCCACACCGGTGAGAGGAACATCAGCATTATTCGTCGCTTTCACCATAAATATAGTACACGATTAA

Function

GO:

id name namespace
GO:0060070 canonical Wnt signaling pathway biological_process
GO:0060729 intestinal epithelial structure maintenance biological_process
GO:0045944 positive regulation of transcription by RNA polymerase II biological_process
GO:0019725 cellular homeostasis biological_process
GO:0005634 nucleus cellular_component
GO:0031491 nucleosome binding molecular_function
GO:0042393 histone binding molecular_function
GO:0046872 metal ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-041114-176 Predicted to enable histone binding activity and nucleosome binding activity. Acts upstream of or within canonical Wnt signaling pathway and intestinal epithelial structure maintenance. Predicted to be active in nucleus. Is expressed in brain; hindbrain; intestine; and midbrain. Human ortholog(s) of this gene implicated in acute monocytic leukemia and acute myeloid leukemia. Orthologous to human MLLT10 (MLLT10 histone lysine methyltransferase DOT1L cofactor).

Ensembl:

ensembl_id ENSDART00000191029

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00046954 lncRNA upstream 241020 16719606 ~ 16901861 (+) False XLOC_022863
TCONS_00046953 lncRNA upstream 241020 16719606 ~ 16901861 (+) False XLOC_022863
TCONS_00045445 lncRNA upstream 242669 16726748 ~ 16900212 (+) True XLOC_022863
TCONS_00045438 lncRNA upstream 933881 16207562 ~ 16209000 (+) False XLOC_022861
TCONS_00045439 lncRNA upstream 934274 16207563 ~ 16208607 (+) True XLOC_022861
TCONS_00045472 lncRNA downstream 44903 17256843 ~ 17259487 (+) False XLOC_022870
TCONS_00045473 lncRNA downstream 45860 17257800 ~ 17258655 (+) True XLOC_022870
TCONS_00046803 lncRNA downstream 68900 17280840 ~ 17282535 (+) True XLOC_022873
TCONS_00045479 lncRNA downstream 106581 17318521 ~ 17319849 (+) True XLOC_022874
TCONS_00046959 lncRNA downstream 110546 17322486 ~ 17325645 (+) False XLOC_022875
TCONS_00045455 mRNA upstream 15048 17068724 ~ 17127833 (+) False XLOC_022868
TCONS_00045456 mRNA upstream 15884 17069420 ~ 17126997 (+) True XLOC_022868
TCONS_00045454 mRNA upstream 119204 17007407 ~ 17023677 (+) True XLOC_022867
TCONS_00045452 mRNA upstream 121428 17005647 ~ 17021453 (+) False XLOC_022867
TCONS_00045450 mRNA upstream 139931 16983329 ~ 17002950 (+) False XLOC_022866
TCONS_00045471 mRNA downstream 44853 17256793 ~ 17259643 (+) False XLOC_022870
TCONS_00045474 mRNA downstream 48061 17260001 ~ 17267235 (+) False XLOC_022871
TCONS_00045475 mRNA downstream 48389 17260329 ~ 17267235 (+) False XLOC_022871
TCONS_00045476 mRNA downstream 50939 17262879 ~ 17263667 (+) True XLOC_022871
TCONS_00045477 mRNA downstream 57909 17269849 ~ 17276770 (+) False XLOC_022872
TCONS_00045453 other upstream 131799 17005678 ~ 17011082 (+) False XLOC_022867
TCONS_00045449 other upstream 157342 16983303 ~ 16985539 (+) False XLOC_022866
TCONS_00045446 other upstream 335233 16807521 ~ 16807648 (+) True XLOC_022864
TCONS_00045443 other upstream 592332 16393527 ~ 16550549 (+) False XLOC_022862
TCONS_00045423 other upstream 1729776 15412989 ~ 15413105 (+) True XLOC_022853
TCONS_00045481 other downstream 110704 17322644 ~ 17325645 (+) False XLOC_022875
TCONS_00045482 other downstream 122738 17334678 ~ 17337526 (+) False XLOC_022877
TCONS_00045484 other downstream 123578 17335518 ~ 17337959 (+) True XLOC_022877
TCONS_00045488 other downstream 526579 17738519 ~ 17738635 (+) True XLOC_022879
TCONS_00045489 other downstream 865603 18077543 ~ 18077659 (+) True XLOC_022880

Expression Profile

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