RNA id: TCONS_00045442


Basic Information

Item Value
RNA id TCONS_00045442
length 5084
RNA type mRNA
GC content 0.49
exon number 22
gene id XLOC_022862
representative False

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 16393302 ~ 16706981 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

tttcaattatAGCTTAAAGTGTTAAGTGTGACCTCTACTGGGTATCTTAAGCTATAAAAAATCCCTAAACAGGAGCTGAACTTTTCAGGATGATCAAAACGAATTGAGCATTGTAAATTCAAAttatgttttgttgctgtttttcgAGAGAGCGGTGTTGTGGAAACTAACGCCCCCGTCATTATCCTCAATGAAGCTGTCCAGGCTGCCTCTATTGCAAACAGGCTGGTAGGTTGAATGGAACGCGCTGCTCTTGTTGCGTCGCGCCGCTCAGTCAGTCACTCAATGCAGAGACGCGGGGGCGCTGCTGACTTCATTCTGTCGCTCTCGGACCGGAGCGCTTCACACAAACTGCCCAGTGAGTTGGACGCACTCCGCGGCTCGGCTGCACCTTCTTCACCGCTCCGCTCTCACTGCCGTCCGGGAAAGTAGTGGAAGTCACTCGCTCTTATTTGCGTACGCGCTCACACGGACTACTGCCACCGTTGCGGACTCAATATAGAGATATTGGGATTATTACACGTCACATATTTCACAGAACTCACTGAGTCTTTGCGGCTTCTCACCTACATGATAAGGAGAAATATTGAGTCACTTCATTTGATTTGCGTGGCAGATGCCCAGTACCCTATGCCCCTGTCCCAGCAGTACTGAGCAGTGTCCCGTGGACCCCCATGGCGGAGGGAAGGCCCCTGGCCCGCGGCCTCGTCCTGCTGCATAGCCTGCTGCTGCTGATGCCCAGAGGAGTGCCCTGCCGGGGGGCCATACGGGCCCTGGAGTCCCCCTGCCACAGAGCTGAACACCCGCTCATCTCTCACACAGATATTGAGCCGTGGATCCACCGGTTCAGAGCTGAAGGCACTGTCGATTATTCACAGCTGACCTTTGACCCTGGCCAAAATGAACTCATCGTGGGTGCAAGAAATCATCTCTTCAGGCTACATTTAGAGGATCTTTCACTGATCCAGGAGGCAGAATGGCATTGTGATGAGTTTACCAAAGGAGCCTGTTTCAGTCGTGGGAAATCAGAGGAGGAGTGCCAGAATTACATCCGTGTCCTCCTCGTCAATGGTGACAGGCTGTTTACCTGCGGAACAAATGCATTCACTCCTATTTGCACCAATCGCACGCTGACTAACCTGACTGAGGTCCATGATCAAATCAGTGGGATGGCACGGTGCCCCTATAACCCTCTGCATAATTCCACCGCCCTCATCACTTCCAGTGGAGAACTGTATGCTGCAACTGCAATGGACTTTTCAGGCAGAGACCCAGCCATCTACCGCAGCTTGGGAGGGCTTCCACCTCTGCGTACTGCTCAGTACAACTCCAAATGGCTCAATGAGCCCAACTTCGTCTCCTCCTATGACATCGGCAACTTCACGTACTTCTTCTTCCGTGAAAATGCTGTGGAGCACGACTGCGGCAGGACTGTTTTCTCTCGGGCTGCCCGCGTCTGCAAGAATGATATCGGGGGCCGTTTCCTTCTGGAGGACACCTGGACTACCTTTATGAAAGCCCGGCTCAACTGCTCACGGCCTGGCGAGATCCCATTCAACTACAATGAGTTGCAGGGAACCTTCTTTCTGCCTGAGCTCGAGCTCCTCTATGGGATTTTCACCACTAATGTTAACAGTATTGCGGCCTCAGCAGTGTGTGCCTTCAATCTGAGCGCTATTACCCAAGTGTTCAGCGGCCCTTTCAAGTACCAAGAGAACTCGCGCTCTGCTTGGCTTCCTTACCCCAATCCTAACCCCGACTTCCAGtgtggTACTATAGATTTTGGCTCGTATGTGAACTTAACGGAGAGGAATCTGCAGGATGCTCAGAAGTTCATCCTGATGCATGAGGTGGTGCAGCCTGTGGTTCCTGTGCCGTATTTCATGGAGGACAATGTGCGCTTCTCTCATGTGGCTGTGGACGTGGTGCAGGGCAAAGACATGCTTTACCACATCATTTATCTGGCAACAGATTACGGCACCATTAAGAAGGTGCTCTCCCCTCTCAACCAGACCACGGGCAGCTGCTTGCTGGACGAGATTGAGCTTTTCCCCCTGAAGAAGAGGCAGCCAATTCGTAGCCTGCTCATCCTTCACAGCCACAGTGAGCTATTTGTAGGAGTCAGAGAGCAGGTCATCAAAATCCCCCTGATGCGCTGCAACTTCCACAAGTCTAGAGAagCCTGTGTGGGGGCCAGAGATCCATACTGCGGCTGGGATCTGGTGCTCAAGAAATGCACCACGCTGGAAGAGAGCGTCAGCATGAGCCAATGGGAGCAGAGCATTACACGCTGTCCTGTGAGAAACGTGACTGTAGATGGTCATTATGGAGCCTGGTCAGGGTGGAAAACTTGTAGTCACAGTGATGGTGGCAGTGTGGGTTCGTGCCAGTGTCGAACCCGAGCGTGTGACAGTCCAAGTCCTCAATGTGGCGGACAGCCTTGCCAAGGAATCAGTGTTGAAGTGGCAAACTGCTCCAGAAATGGGGCATGGACACCGTGGACTGCCTGGGCTCCATGCAGCACCAGCTGTGGGATTGGATTCCAGGTTCGGCAGCGTTCCTGCAGTAACCCCACTCCCAGACATGGAGGACGCGTCTGTGTGGGCCAGAACCGAGAGGAGAGATACTGCAATGAACACCTGCCGTGTCCTCCGCATGTCTATTGGTCAGCTTGGTCTCCTTGGGAGCGCTGCACAGTTCCTTGCGGTGGAGGAATCCAGTCACGGCGAAGAACGTGTGAGAATGGAAATGAATGCCCTGGATGCAGCACTGAATTCCAGTCCTGTAACACCCTCCCCTGTCCGGATCTGAAGAAGACCACGCCCTGGACCCCATGGACCCCAGTGAATATCTCAGACAATGGTGGCCACTACGAGCAGCGCTTCAGATACACCTGTAAAGCTCGAGTCCCAGAGCCCGGCCTGCTGGAAGTTGGACGACAGCGAATCGAAATGAGGTACTGCTCCAGCGACGGCTCCACGGGCTGCTCCACTGACGGAGATTTGCTGCGTTCTGGACGTATCACTGGATTGACAGTAAATGGAGGCTGGTCCGTCTGGGGCCCCTGGAGCCAGTGTAGTCGAGACTGTAGCTCAGGTGTCCGAAATCGCAAACGCACCTGCTCCAACCCCAAACCCAAGTATGGAGGAATTACCTGCCTCGGGCCAGCCCAAGAgttccaggagtgcaataccacACCATGTCCAGTGGACGGGAGCTGGTCGTGCTGGTCACCTTGGTCGAAATGCTCAGTGACATGCGGCGGAGGCCATTACATGCGCACACGCTCCTGTAACAACCCTCCACCTGCCTATGGAGGTGACATCTGCCTGGGTTTGCATACTGAAGAGGCCCTCTGCAACATCCAGCCCTGTCCTGaGAGCTggtctgattggtcagaatggtCCCCCTGTGACTCATCAGGGTCTCAGGTTCGCCTCCGGCATTGTGACGTCTTGTTTCCCACCGGCAACCAGTGCTCTGGCAACAGCAGTGAAACTCGTGCCTGTCTGCCCATCTCCAACTTCATCCCAGAAACGTCTGTTGCACGTTCAAGTCAGGAGGAAAGATGGTGTGGAGACTTCAATGTGTTCCACATGATCGCCGTGGGTCTGAGCAGCTCCATACTCGGCTGCTTGGTCACTTTACTGGTGTACACATACTGCCAGAGATACCAGCAGCAATCCCATGATGCCACAGTCATCCATCCTATCTCTGCTGCCCCGCTCAACACCAGCATCAGCAACCATATCAACAAACTGGACAAGTATGACTCAGTTGAAGCCATTAAGgcTTTCAATAAGAATAACTTGATCCTGGAGGAAAGAAATAAGTATTTCAACCCTCAGCTAGCAGGAAAAACATATACCAACGCATATTTTACTGACGTCAACACATACGACGACTTTTAAAGCTGGATCTGTGATTCCAGTCATCATCTTCAGCACCTAGTGATATTTTCTTTGCCTCTTTTTCTTCACCtggataaataaaaaagacattttatgtGGGACCATTTCACCATCAAAGGCCAATAACGCTGTACAGAACCATTTTCAGAGTTAACAAGGACATCATGCTTTCCAATTGTGGACATCCCTGAATGAAATTGAACTCCGGTGGACAAATAAATCAGGCGATTTGATTCAACCGCTGATAAACTCTTGCTGTAAAGATGACACATGGACGCTTTGCATGATTCTCATctaatatgttttttctttaagCGTCGCTTCATTTATTTGCATGGTTGGTCGCATTCCAGTGTTTGTGGGCGTGGCCTGCATCATAAGTGGGCAGAGCCTTGTTTCCTGTGCCGAATCAGATGCCCCTGTGCCTCACTAAGGACCTACAGTGGTCTAAAGTGCATCAGCCTGCCCTAAAATGAGGTTTTGccacaacagacacacacacacaacccatgTGTAGATAACAAAGAATGTGTTCATATATCTCTCAATATGGGGCACTTGTTAGTTGAGCTCTTAGCAGTGGTGGGAAtctctgtgttttgtttttagttgttgtttttttttttttttcgttgttgttgttgtacaaaACACTTTTCATGAGGCATATGTCTGTAGTTTTTATAGATGAGTCTATTCTGAAGAAAAGAAAAGTGTTTCAAAGTAACCCTGTTCAGTCACCCAAATGAGACTTGTCATATTAACATTCGTCTTTATGTGGTGTAAGGTCTGCAAAAACAGAGAGAATGTGAAACACTACAGGACCTTTTTATGTAAAACATTGATCATTTGAATATTATCAACATGTTTCtatttgtttagttgtttaaGTAGATTTAAAGAGAAgacaattattatatataaaaaacaaactgcTTTTCAGCACAAAAACTGCTATTTCAGCgttattttcttttcagactTCTGAATGAATTTACTTATGAacttaaccatccatccatcttagaAGAGGTGCTTGGGAATTCACTTTTCCGTTTTCTACTAATTCTTTTCTACTTGTAAaactttgtttgcttgttttatgtGCATAAATTAAAATTGCTTCATATACCTGGGTGTGTGCGATTTATGAAGTGTTATGTACTTGAATTG

Function

GO:

id name namespace
GO:0001755 neural crest cell migration biological_process
GO:0048843 negative regulation of axon extension involved in axon guidance biological_process
GO:0048675 axon extension biological_process
GO:0007411 axon guidance biological_process
GO:0030335 positive regulation of cell migration biological_process
GO:0071526 semaphorin-plexin signaling pathway biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0045499 chemorepellent activity molecular_function
GO:0030215 semaphorin receptor binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-8969 Predicted to enable chemorepellent activity and semaphorin receptor binding activity. Acts upstream of or within axon extension. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in CaP motoneuron and myotome. Orthologous to human SEMA5A (semaphorin 5A).

Ensembl:

ensembl_id ENSDART00000177790

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00045438 lncRNA upstream 184302 16207562 ~ 16209000 (+) False XLOC_022861
TCONS_00045439 lncRNA upstream 184695 16207563 ~ 16208607 (+) True XLOC_022861
TCONS_00045434 lncRNA upstream 216002 16174519 ~ 16177300 (+) False XLOC_022860
TCONS_00046954 lncRNA downstream 12625 16719606 ~ 16901861 (+) False XLOC_022863
TCONS_00046953 lncRNA downstream 12625 16719606 ~ 16901861 (+) False XLOC_022863
TCONS_00045445 lncRNA downstream 19767 16726748 ~ 16900212 (+) True XLOC_022863
TCONS_00046955 lncRNA downstream 490242 17197223 ~ 17213775 (+) False XLOC_022869
TCONS_00046956 lncRNA downstream 490242 17197223 ~ 17214997 (+) False XLOC_022869
TCONS_00045431 mRNA upstream 228544 16149251 ~ 16164758 (+) False XLOC_022858
TCONS_00045430 mRNA upstream 245597 16140423 ~ 16147705 (+) True XLOC_022857
TCONS_00045429 mRNA upstream 256617 15899365 ~ 16136685 (+) True XLOC_022856
TCONS_00045428 mRNA upstream 256733 15897717 ~ 16136569 (+) False XLOC_022856
TCONS_00045427 mRNA upstream 722264 15670013 ~ 15671038 (+) True XLOC_022855
TCONS_00045447 mRNA downstream 198207 16905188 ~ 16912897 (+) True XLOC_022865
TCONS_00045448 mRNA downstream 276288 16983269 ~ 16992516 (+) False XLOC_022866
TCONS_00045450 mRNA downstream 276348 16983329 ~ 17002950 (+) False XLOC_022866
TCONS_00045451 mRNA downstream 278200 16985181 ~ 17002640 (+) True XLOC_022866
TCONS_00045452 mRNA downstream 298666 17005647 ~ 17021453 (+) False XLOC_022867
TCONS_00045423 other upstream 980197 15412989 ~ 15413105 (+) True XLOC_022853
TCONS_00045420 other upstream 1348514 15020402 ~ 15044788 (+) False XLOC_022851
TCONS_00045413 other upstream 1756999 14623831 ~ 14636303 (+) True XLOC_022846
TCONS_00045414 other upstream 1757883 14635303 ~ 14635419 (+) True XLOC_022847
TCONS_00045400 other upstream 2042282 14350900 ~ 14351020 (+) True XLOC_022840
TCONS_00045446 other downstream 100540 16807521 ~ 16807648 (+) True XLOC_022864
TCONS_00045449 other downstream 276322 16983303 ~ 16985539 (+) False XLOC_022866
TCONS_00045453 other downstream 298697 17005678 ~ 17011082 (+) False XLOC_022867
TCONS_00045465 other downstream 490242 17197223 ~ 17209646 (+) False XLOC_022869
TCONS_00045467 other downstream 493477 17200458 ~ 17209595 (+) False XLOC_022869

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000018_01924489_01985310.mRNA False 2412 mRNA 0.54 15 CI01000018 1924489 ~ 1985310 (+)