RNA id: TCONS_00045428


Basic Information

Item Value
RNA id TCONS_00045428
length 3269
RNA type mRNA
GC content 0.45
exon number 11
gene id XLOC_022856
representative False

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 15897717 ~ 16136685 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TCCGCAGGCTGCAGATGCTCCTCGCCAATCCAGCATTGCAGGTGCAGTTAATGCTGGAGATGCTGATACTTCTGGCTTGATGTCCATCTTTTTTCCCTCCTTGTTTGGTTTCCTCACGCAGTGCTTTTTTTCTGCTTACCCCTTAGCTTTTTTTCCTCTGTGCTGCCGTGTGAGGTGTTGTATTCACCGGATCCCGCAGTCTGACCGGCTTTGCGGTGCTTCTTCGAGAGCATCATCTATTCTTCAACATTAGTGGATTTATGACGAACAGTTCCGTGTGCTGCCGCATCATGTTGACATAACTCTGCCGAAGAACTGAAAATAATGAATGGCAAGAGAGAAGAGATGATATGAATAAACTCTTTGATGTGGAGAGAAGCGGGAAAAGGGGTTTCTACTGAATATATTGGCGAGGAAGCGCGGGAATGAGGCACGTTTCTTGTCGCTGTGAGTTTTCTTGTTGAAGTTGTCTATGCTCATCAATGGAAAAACGAATTGAAACGAATATTCGGATAAGTGCTTATTAGAGATGGAAGGGAGCTTTTTCAAccttttccctttattaatcttttcGTGGTGACTCTGGAAAGGTGGAGCGATCAGGAAAAGCTAATGACGGACCTATTAATCCATCACCAAAAGCACCAGAGGGCTTTGGAAACGTTTGGATGGAAGCGTTTGCATCTTTTTTTCTGGTTTTATACGAAACTCATGCATACTGTAGTTGTGGATCTCTGCTGGAATCTCCGTCGTCATTGATTAATTTATAGTGAAGGGAATCCAGGGCTCTGTTGGCACATTTGCTGTGATTTTTCGTTTTCTGTATTGCAAAGATCCATCTTTTCTTCTGAAAGTATTCCGATCTAAATGGAATTAGTTGAGAAAGCCATTTGTGAAAGGAATAGACATGGTACATGGGAACAGGTTCCTTCACGTTGTTGCAGGTCTTCTCATGCTTGGGTTGTCTGGGGCAACAAAGAAGGAAGCAGTGAAAAACAATTCAGGAGTACAGCCTGCAGGGCAGTGTGGAACCTGGGTGAAAGAACCGGAGGGAGGCCTCTTCACCTCACCCAATTACCCAAACAAATATCCCCCAGAGCGAGAATGCATCTACATCATTGAAGCTCCCCCGAGACAATGCATTGATCTTTTCTTTGATGAAAAGTATTCAATTGAGCCTTCATGGGAATGTAAATTTGACCATATTGAAGTCCGGGATGGACCCTTTGGCTTTTCTCCAATAATTGGACGCTACTGCGGACAGCAAAACCCTCCATATATCAGATCAAGCGGCCGCTACCTATGGATAAAATTTGTTGCGGATGGTGAATTGGAGGCCATGGGATTTTCTGCAAGCTACAATTTCACATCAGatCCTGACTTTAAAGACATAGGAGTCCCCAAACCTCTTCCCTTTTGTGAATTCGAGATGGGAGGACCCGAAGGCATCATTGAATCTCAGCAGATCACCAAAGATGGCAGAGCCTTGCAGACGGAGGCGGTGGACTGCAAATGGTACATCCGTGCACCTCCTCGATCCAAGATCTATTTGCGTTTCCTCGACTATGAGATGCAGAATTCGAACGAGTGCAAGCGTAATTATGTGGCGGTGTATGACGGCAGCAGCTCGGTGGAGGACCTGAGGAATAAGTTCTGCAGCACAGTGGCCAATGATGTGATGCTCGTGTCTGCGCTGGGTGTGATCCGCATGTGGGCTGATGAGGGCAGCAGAAAGAGCCGCTTCAGGATACTCTTCACCACCTTTCAAGAGCCTCCCTGTGAGGCAGACACTTTCTTTTGCCACAGTAACATGTGTATCAACAACACGCTGGTGTGCAACGGAATCCAGAACTGCGTCTATCCTTGGGATGAGAATCACTGCAAAGAAAAGCGGAAAGCAAACATTCTCGACAGCCTCAACAACACCAATGGCACCATCATCGGCGTCACATGCTGCATCGTCCTGATTCTACTAATCGTATCAGTGATTGTTCAAATCAAGCAACCACGGAAAAAATACATTCTAAGGCGAGAAGATTTTGACCCAACCATGTTCCAGGAAGTGTTTCAGGAGCCACCCCATTACGAACTGTGTACCCTACGTAGCGCTGCCGCCACATCTGCAGACCTGGCCGAGCTGGCAGAAGATTTTGAGAGCTACCACAAACTCAGGCGCGCATCTTCACGCTGCATCCACGAGCATCATTGCGGCTCCTCACAGATCTCCAGCAACAAGGGAAGTCGCACCAACCTGAGCGCACGTGACGCGGCAGCGGCGGCCATCTTGACTGACCTGCCACCCCAACCCATGCGACCGCTTCCTCCCCAAACCAACCGCAGGAACATTCTGGTCATGAGACACACTTACTCCCAAGATGCCACTGATGCCTGTGAGCTGGACGATGAGTTGGAGGAAGTGCCCACTACCAGCCACAGACTGTCCAGACATGAGAAAGCAGTGCAGCGGTTCTGCCTCATTGGGTCTCTAAACAAACATGAATCTGAGTACAACACAACTAGAGTGTAACAGACAATCTGAAGGCTGTTCCATCATTCCCTCCACCTCTCGTGACTGACATCTTGTGGAAATGGCCTTAAAGAACTTGAAGAGGTTGACATTGtgacattttttgtcaatttTTAGTATTTGTCTGGGAATATCTTGACACCGATTCATGTTCAGTATCAGATACTGTGAAGCTCTTGGAGACTTCAACATTTTTTCAGATTCTGGACTGAAACTGAATATACAAACTGATGTACATGTTTCATTCAGTGGGATATGaacatgtttttatttcttcTGATTTGATGATTGTAATGCTCAGATTATTTTTCAATACAATCTGTAATGTCCTAAGTAAGTGCAAAACGTTTTTACTTTACAAGAAACATAGATCAAGACCTTTAAAACACAACCATACAGTCAAATACATGAACCAAGGGGTAAACTAGTTTCAAATTCTCTAGGTGATTTCACTGTGACTTTTGCCTGGTTAGACGTCTCTGACTAGCATCTCTCACAAGACTTGTTCTCTTAATGTGCAACATTAAGGTCAGTTATGGTCATGTCTATGCATACAGTAAAATATGAGTGTTCCGAGCAACTTTACAGATACAGTAAATTGGTATCAACTGAAAGACAAGCACATATCAGAATATTTCCCTTCTACGATTACGATTTCTGAAACCTATCATTTGATTAAGTATTTAGTTAATATATTTGAATGATGCTgactgaatattttaaataaagtgaatCAAACCTA

Function

GO:

id name namespace
GO:0048168 regulation of neuronal synaptic plasticity biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-091207-1 Predicted to act upstream of or within regulation of neuronal synaptic plasticity. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human NETO1 (neuropilin and tolloid like 1).

Ensembl:

ensembl_id ENSDART00000105956

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00046951 lncRNA upstream 1311908 14582244 ~ 14585809 (+) True XLOC_022845
TCONS_00045407 lncRNA upstream 1342363 14553315 ~ 14555354 (+) True XLOC_022843
TCONS_00045405 lncRNA upstream 1347104 14541089 ~ 14550613 (+) False XLOC_022843
TCONS_00045406 lncRNA upstream 1348134 14541281 ~ 14549583 (+) False XLOC_022843
TCONS_00046950 lncRNA upstream 1819081 14055096 ~ 14078636 (+) True XLOC_022837
TCONS_00045432 lncRNA downstream 12871 16149440 ~ 16164447 (+) True XLOC_022858
TCONS_00046802 lncRNA downstream 30196 16166765 ~ 16185858 (+) False XLOC_022859
TCONS_00046952 lncRNA downstream 35342 16171911 ~ 16194730 (+) True XLOC_022859
TCONS_00045433 lncRNA downstream 37630 16174199 ~ 16175294 (+) False XLOC_022860
TCONS_00045434 lncRNA downstream 37950 16174519 ~ 16177300 (+) False XLOC_022860
TCONS_00045427 mRNA upstream 226679 15670013 ~ 15671038 (+) True XLOC_022855
TCONS_00045426 mRNA upstream 228507 15655233 ~ 15669210 (+) True XLOC_022854
TCONS_00045425 mRNA upstream 228661 15655069 ~ 15669056 (+) False XLOC_022854
TCONS_00045424 mRNA upstream 228661 15655069 ~ 15669056 (+) False XLOC_022854
TCONS_00045422 mRNA upstream 618942 15277216 ~ 15278775 (+) True XLOC_022852
TCONS_00045430 mRNA downstream 3854 16140423 ~ 16147705 (+) True XLOC_022857
TCONS_00045431 mRNA downstream 12682 16149251 ~ 16164758 (+) False XLOC_022858
TCONS_00045440 mRNA downstream 256733 16393302 ~ 16702919 (+) False XLOC_022862
TCONS_00045442 mRNA downstream 256733 16393302 ~ 16706981 (+) False XLOC_022862
TCONS_00045441 mRNA downstream 256733 16393302 ~ 16706981 (+) False XLOC_022862
TCONS_00045423 other upstream 484612 15412989 ~ 15413105 (+) True XLOC_022853
TCONS_00045420 other upstream 852929 15020402 ~ 15044788 (+) False XLOC_022851
TCONS_00045413 other upstream 1261414 14623831 ~ 14636303 (+) True XLOC_022846
TCONS_00045414 other upstream 1262298 14635303 ~ 14635419 (+) True XLOC_022847
TCONS_00045400 other upstream 1546697 14350900 ~ 14351020 (+) True XLOC_022840
TCONS_00045443 other downstream 256958 16393527 ~ 16550549 (+) False XLOC_022862
TCONS_00045446 other downstream 670952 16807521 ~ 16807648 (+) True XLOC_022864
TCONS_00045449 other downstream 846734 16983303 ~ 16985539 (+) False XLOC_022866
TCONS_00045453 other downstream 869109 17005678 ~ 17011082 (+) False XLOC_022867
TCONS_00045465 other downstream 1060654 17197223 ~ 17209646 (+) False XLOC_022869

Expression Profile

//