RNA id: TCONS_00045447


Basic Information

Item Value
RNA id TCONS_00045447
length 1906
RNA type mRNA
GC content 0.49
exon number 11
gene id XLOC_022865
representative True

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 16905188 ~ 16912897 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AACTTGGTTTGGTCCGTCCCTCCCCGAGATTCTTCCAGAACTAGCCGGCAGATCCGCGCGGTGAGGTGCGCAGCTAGAGGATTAAATTCTCTAGTATAACATCACTTTTCATAACTGTGCATTTCTTTGGGGTGGAAATTAAACATGTCCGCGCTTGGGACTCTCGCCTTCGATGAATATGGAAGGCCTTTCATCATCATAAAGGACCAGGACAAGAAATCTCGCTTGACTGGCCTGGAAGCACTGAAGTCTCACATTCTTGCAGCAAAAGCAGTTGCTAACACCCTGAGAACATCGCTAGGTCCAAATGGACTTGACAAGATGATGGTGGATAAGGATGGTGAGGTGACCGTGACCAATGATGGTGCGACGATCCTCAGCATGATGGATGTGGACCATCAGATTGCCAAGCTCATGGTTGAGCTCTCCAAGTCTCAAGATGATGAAATTGGAGATGGAACCACTGGTGTTGTTGTTCTGGCCGGAGCTCTTCTGGAGCAGGCAGAGCAGCTGTTAGACCGAGGCATTCACCCCATCAGAATTGCAGATGGTTATGATCAGGCCGCAAAGATCGCCATCGAACAGCTCGACAAAATCGGTGATAGTTTCCCTGTGGATCCTAACAACACAGAATCTCTCGTTCAGACAGCCATGACCACACTAGGATCCAAAGTGATCAACCGGTGCCACAGACAGATGGCAGAGATTGCTGTCAATGCCATTCTGACAGTGGCAGACATGGAGAGGAAGGATGTGGACTTTGAGCTCATTAAAGTGGAAGGAAAGGTTGGTGGTAAACTAGAGGACACTCAGCTCATCAAAGGTGTCATTGTGGACAAAGAGTTCAGTCACCCTCAGATGCCCAAGGTGCTCAAAGACACCAAAATTGCCATCCTCACCTGCCCATTTGAGCCTCCCAAGCCCAAAACCAAGCATAAGCTTGATGTGACATCAGTGGAGGATTATAAAGCTCTGCAGAAGTACGAGAAGGACAAGTTTCAGGAAATGATCCGACAGGTCAAGGAGAATGGCGCCAATCTTGCCATTTGCCAGTGGGGATTTGACGACGAGGCCAATCATTTACTCCTGCAGAATGAGCTTCCTGCGATCCGCTGGGTCGGTGGACCTGAGATTGAGCTCATCGCCATTGCTACTGGAGGACGTATAGTACCCAGATTCTGTGAACTGACCCCAGAAAAGCTGGGCACCGCTGGACTGGTGAAAGAAATCTGCTTCGGGACCACAAAAGACAGAATGCTGGTCATCGAGGAGTGCAAGAACTCCAGAGCCGTTACCATCTTCATCCGTGGCGGGAACAAAATgATTATTGAAGAGGCCAAAAGAGCTCTTCATGATGCCCTGTGTGTCATCCGTAACCTGGTGAGGGATAATCGTATCGTGTATGGTGGTGGAGCCTCAGAGATAGCCTGCGCTCTTGCGGTTAATGAAGCTGCTGATAAGTGCCCGTCTCTGGAGCAGTACGCCATGAGGGCATTCGCTGACGCTCTAGAGGTCATCCCAATGGCACTGGCTGAAAACAGCGGTTTGAACCCCATTCAGACAATGACGGAGGTCAGAGCCCGACAAGTCAAAGAAAACAACTCTGCACTTGGAATTGACTGTCTACATTTATCAACGAATGACATGAAGCAGCAGCATGTAATCGAGACCCTTATCGGGAAGAAGCAGCAGATCTCTCTGGCCACTCAAGTTGTAAAGATGATTCTGAAGATTGATGACATCAGAGGCCCCGGCGAGCCTGAAGACTGAGCGTCCTGTAGCAGTGTTGAAATGAACGGTCTCAAGCACTTCTAAAGGAATGTGTCGAACCTTCGTACTGTTATTTATCATTTGTTACAGTTCATTGTCGTAACGAAGTGATcattaaacttttgttttcaaatta

Function

GO:

id name namespace
GO:0006457 protein folding biological_process
GO:0030240 skeletal muscle thin filament assembly biological_process
GO:0005832 chaperonin-containing T-complex cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0051082 unfolded protein binding molecular_function

KEGG:

id description
ko03110 Chaperones and folding catalysts
ko03036 Chromosome and associated proteins
ko04147 Exosome

ZFIN:

id description
ZDB-GENE-030131-977 Predicted to enable unfolded protein binding activity. Acts upstream of or within skeletal muscle thin filament assembly. Predicted to be part of chaperonin-containing T-complex. Is expressed in several structures, including epidermis; nervous system; pharyngeal arch 3-7 skeleton; proliferative region; and yolk syncytial layer. Orthologous to human CCT5 (chaperonin containing TCP1 subunit 5).

Ensembl:

ensembl_id ENSDART00000066760

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00046954 lncRNA upstream 3327 16719606 ~ 16901861 (+) False XLOC_022863
TCONS_00046953 lncRNA upstream 3327 16719606 ~ 16901861 (+) False XLOC_022863
TCONS_00045445 lncRNA upstream 4976 16726748 ~ 16900212 (+) True XLOC_022863
TCONS_00045438 lncRNA upstream 696188 16207562 ~ 16209000 (+) False XLOC_022861
TCONS_00045439 lncRNA upstream 696581 16207563 ~ 16208607 (+) True XLOC_022861
TCONS_00046955 lncRNA downstream 284326 17197223 ~ 17213775 (+) False XLOC_022869
TCONS_00046956 lncRNA downstream 284326 17197223 ~ 17214997 (+) False XLOC_022869
TCONS_00045466 lncRNA downstream 287226 17200123 ~ 17209579 (+) False XLOC_022869
TCONS_00046957 lncRNA downstream 287226 17200123 ~ 17213775 (+) False XLOC_022869
TCONS_00046958 lncRNA downstream 287561 17200458 ~ 17214997 (+) False XLOC_022869
TCONS_00045442 mRNA upstream 198207 16393302 ~ 16706981 (+) False XLOC_022862
TCONS_00045441 mRNA upstream 198207 16393302 ~ 16706981 (+) False XLOC_022862
TCONS_00045444 mRNA upstream 198249 16547035 ~ 16706939 (+) True XLOC_022862
TCONS_00045440 mRNA upstream 202269 16393302 ~ 16702919 (+) False XLOC_022862
TCONS_00045431 mRNA upstream 740430 16149251 ~ 16164758 (+) False XLOC_022858
TCONS_00045448 mRNA downstream 70372 16983269 ~ 16992516 (+) False XLOC_022866
TCONS_00045450 mRNA downstream 70432 16983329 ~ 17002950 (+) False XLOC_022866
TCONS_00045451 mRNA downstream 72284 16985181 ~ 17002640 (+) True XLOC_022866
TCONS_00045452 mRNA downstream 92750 17005647 ~ 17021453 (+) False XLOC_022867
TCONS_00045454 mRNA downstream 94510 17007407 ~ 17023677 (+) True XLOC_022867
TCONS_00045446 other upstream 97540 16807521 ~ 16807648 (+) True XLOC_022864
TCONS_00045443 other upstream 354639 16393527 ~ 16550549 (+) False XLOC_022862
TCONS_00045423 other upstream 1492083 15412989 ~ 15413105 (+) True XLOC_022853
TCONS_00045420 other upstream 1860400 15020402 ~ 15044788 (+) False XLOC_022851
TCONS_00045413 other upstream 2268885 14623831 ~ 14636303 (+) True XLOC_022846
TCONS_00045449 other downstream 70406 16983303 ~ 16985539 (+) False XLOC_022866
TCONS_00045453 other downstream 92781 17005678 ~ 17011082 (+) False XLOC_022867
TCONS_00045465 other downstream 284326 17197223 ~ 17209646 (+) False XLOC_022869
TCONS_00045467 other downstream 287561 17200458 ~ 17209595 (+) False XLOC_022869
TCONS_00045468 other downstream 296460 17209357 ~ 17213775 (+) False XLOC_022869

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000018_02072273_02080049.mRNA True 1770 mRNA 0.49 11 CI01000018 2072233 ~ 2080153 (+)
mexican tetra (Astyanax mexicanus) TU29690 True 1851 TUCP 0.39 11 NC_035899.1 27513606 ~ 27520186 (+)