G377835


Basic Information

Item Value
gene id G377835
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 20762944 ~ 20766785 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU429470
TGCAAATGTACATAAATTGCACAGCCACATTGTTTTGAATATATCATCAACACAAATTCCTCTGTACATTATTGTTTTCACCACTGTTGTCCAAGGAAGCAGAATCCAGCAAATACTTCACTTTCAACATACTTACAAAAGTATTTTCTAAGATATTAGAAAACATACAACATCTTTCACTTTATTTATAGATGTATATTTAGTTTATAGTATTTTTCTCACTGGCTctaactgtactgtatgtataatgagTTTGTGTGGCTACAGAGACATCATcaccacatttctctctctgactctcctaTATTCTCTAACAACTTAATGAAGGTGGAACAGAGCTGGGATGCTACCAGAAACATACCCAAGATTTAGAATTGATAGCCAAATGAAATGACATTGCATTCCCTATTTCTATGGAAGAGGCTTCATGTTGTGTTGCCCTAGTAATACTAATAGATCATTAGAAGGTTTATACCAGTATTAATCTAGCTGATTTGGGAGAGTTGGCATTTCAATGGCACAGGCTAGTTTGTAAGGTAGGGTTCCACGGTAGAGGGCTACGGATGAGAAGTGGAGACTACTCAGGGGACTAGACTTAAGTCCCTAATATCACAGTCAGTACTCCTTCAAACTCTGGAAATAAAATACATCATTGTTGAAGTTTGAGCCAATCATCTGAAATCTAGTGGTTCGGTAGTGCACTCCACTACATGGCTAATCAAGCCCAGAGTGCACATTTCTGCAGTCCAAAAGATGGAGTTTTTATGGAACGTAGACTAATAATGCTTAAAACCCAATTTTAAAAGTGCATAGAGCTGGGCTGATGAGAAATGGGattttgtgcttgtgtttctctttctccacAATTGATTGGTCATAGAATGCTGGACGTTTGGATTCTCCCTGTCCTCTACACACCTGAAATCAACAGTAAATTgtcattttacatttttttttgcaactATTAATTTTAAAGTGGTTTTCCCTTGATCGAAAAAGAGAAGAATGAAtgtggtggtggagaggagagacttAGATCTACAGGCTAAAACCTGGAGATCTAACTGAACAGGACAGATGACTGACTGAGCTATTTACAATTTACATGATGTCATATCGATCGATAGAGCAGTATTTTTGAACACAAGgtacataaaaaaaactatttttatcATTAGGTAAAAATATTGTGAACATTTAATGTACACTCGTCTCCAAGCCTGTCCAGCCTCTTGATACACTAATCGTTatcatacacagtaccagtcaaaagtttggacacacctactcattcaagggtttttctttatttggactattttctatattgtagaataatagtgaagacatcaaaactatgaaataacacatatcatgTAGTCATgtaatcatgtggtaaccaaaaaaagtgttaaacgaataaaaaaatattttatactaATGTGAACGCTAATaaatcgggaagcaagtacagggagtgaatttaataaataaatgaaaatggaacaaaacaagaaacacgagtagGGTACAGACATGAAACATGGAGTCAATAACTcctggggaaagaaccaaagggagtgacagatatacgggaggtaatcaggaaggtgatggagtccaggtgagtctcatcAGGCCAGGTGAGCATAACGATGACAGTTGTGCATAGTAATGAGTAAACTGGAGACAACGAgcggcagagagggggagaaggagtatacgtgacagtaccccctccctgacctgcggctccaCCAAGGACCAGCAGCGGGCCGATCTCTTCTGCTGAGGCGCGGGAATCTGCAGAGCCAACTGAGGCACGGGAACCTGTAGAGCCAGCTGAGGCACGGGAACCTGCAGAGCCAgctgaggcgcgggaacctgtagaGCCAGCTGAGGAGTGGGAACCTGTAGAGCCAgctgaggcgcgggaacctgtagaGCCAGCTGAGCCGCGGGAACCTGTCGAGCCGGCatgggagcccgacgagccggctgaggcatgggatCCCGACGAGCtagctgaggcatggaagcctgacgagccaaCCGAGGCTTGAGAACCTGTCGAGCCAGCTGTCCCGGAAGCCTGTCGAGCCAGCTGTCAcggaagcctgacgagccagctgtcatggaagcctgacgagccagctgtcacggaagcctgacgagccagctgtcacggaagcctgacgagccagctgtCACGGAAGCCTGACGAGCCATCTGAGGCATCCCTGGTTGCATCGGCAGCCGCCCTTGGACCCAACGTCAACAGTAAAAAATCATCCCTGTTGCTTCCCTTTGGTGAGGTGTTATTCTATAACGTGTACGCTAATAACGTGTACGCTAATAACGTGTACGCTAATAACGTGTGAGCTAAtaatcgggaagcaagtacaaGGAGTGAATTGAATTAATAAAcgaacatggaacaaaacaagagacacgagtagcgtacagacatgaaacataTAAACAGAGTCAAAAACGCCTGgtgaaagaaccaaagggagtgacagatgtaggggaggtaatcaggaaggtgagaGTAACGATGACAGTTGTGCGTAATAATGAGTAAACTGGTGACAACTAGCGCCAGAGACagggagcgggagtagacgtgacatatattttagattcttcaaagtagccaccctttgccttgatgacagcattgcacactattggcattctctcaaccagtttcatctggaatgcttttccaacagtcttgaaggagttcccacatatgctgaggacttgttggctgcttttccttcattctgtggtctaactcatcccaaaccatctcaattgggttgaagttgggtgattgtggaggcctggtcatctgatgcagcactccatcactctccttctcggtcaaatagcccttacacagcctgaaggtttgttgggtcattgtcctgttgaaaaccaaatgataGCCCAACTAAGCATAAACCAGGTAGGATGCTTCATGGTGGAaaccacatatgcggagatcacctactctgtgtctaacaaagacatggaggaaggaaccaaaaatctcaaatttggattaatcagaacaaaggacagatttccaccggtctaatgcccattgctcgtgttatttttgcccaagcaagtctcttcttcttattggtgtcctttagtagtgtttctttGCAGCTATTCGACCATGAAGCcccgattcacgcagtctcctctgaagagttgatgttgagatgtgtctgttacttgaactctgtgaatcattaatcttggctgcaatctgaggtgcagttaactctaatgaacttatcctctgcaacagaggaaactctgggtcttcctttcctgtggtggtcctcgcaagagcaagtttcatcattgccttgatggtttttgcaactgcacttgaataaactgtCAACGTTCTTGAAaggttccatattgactgaccttcatgtcttaaagtaatgatagactgtcatttctctttgcttatttgagctgttcttgccataatatggacttagccctatttggtaaaagaccatcttctgtataccacccatacattgtcacaacacaactgattggctcaaatgcattaagaaggaaatacattattataacaaggcacacttgttaattgaaatgtattccaggtgactacctcatgaagctggttgatagaatgccagtgtgcaaagctatcatcgaGGCAAAGGTTAGCTACttaatatatttagatttgtttaacactttttttggttactgcatgattccatatgtgttatttcatagttttga

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU429470 True 3813 lncRNA 0.43 2 20762944 20766785

Neighbor

gene id symbol gene type direction distance location
LOC110523392 NA coding downstream 711102 20044243 ~ 20051842 (-)
LOC110523381 LOC106568667 coding downstream 937410 19621025 ~ 19825534 (-)
LOC110523387 LOC106562971 coding downstream 1144875 19590144 ~ 19618069 (-)
LOC110523382 prkaa1 coding downstream 1182628 19561879 ~ 19580316 (-)
LOC110523384 LOC106568686 coding downstream 1203190 19507723 ~ 19559754 (-)
LOC110523394 LOC100194676 coding upstream 76606 20843391 ~ 20851224 (-)
LOC110523399 LOC106568557 coding upstream 241140 21007681 ~ 21018966 (-)
LOC110522820 LOC105889199 coding upstream 393496 21160281 ~ 21162494 (-)
LOC110523403 ubb coding upstream 405859 21172644 ~ 21175591 (-)
tpst2 LOC106568446 coding upstream 409363 21176148 ~ 21182983 (-)
G377799 NA non-coding downstream 3746 20758346 ~ 20759198 (-)
G377820 NA non-coding downstream 28270 20728234 ~ 20734674 (-)
G377810 NA non-coding downstream 53823 20708895 ~ 20709121 (-)
G377808 NA non-coding downstream 58398 20704341 ~ 20704546 (-)
G377792 NA non-coding downstream 81489 20681078 ~ 20681455 (-)
G377844 NA non-coding upstream 4894 20771679 ~ 20771991 (-)
G377856 NA non-coding upstream 14201 20780986 ~ 20781207 (-)
G377857 NA non-coding upstream 14533 20781318 ~ 20781543 (-)
G377858 NA non-coding upstream 14930 20781715 ~ 20781992 (-)
G377850 NA non-coding upstream 31529 20798314 ~ 20807599 (-)
G377809 LOC106568602 other downstream 57804 20704613 ~ 20705140 (-)
G377800 NA other downstream 68236 20694096 ~ 20694708 (-)
G374786 NA other downstream 2203777 18558140 ~ 18559167 (-)
G374189 NA other downstream 2759774 18002820 ~ 18003170 (-)
LOC110523354 LOC106569496 other downstream 3241457 17483696 ~ 17521507 (-)
G377991 NA other upstream 262673 21029458 ~ 21029783 (-)
G378359 NA other upstream 1024877 21791662 ~ 21791993 (-)
LOC110523434 LOC106567989 other upstream 1410480 22177265 ~ 22179322 (-)
jmy LOC106568093 other upstream 2032915 22799696 ~ 22859199 (-)
LOC110522831 LOC106563032 other upstream 2780415 23488916 ~ 23556681 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) G59852 NA non-coding CM030127.1 CM030127.1 3671023 ~ 3675014 (-)