XLOC_026559 (ighv4-8)


Basic Information

Item Value
gene id XLOC_026559
gene name ighv4-8
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 34086948 ~ 34087394 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00051741
CATCACCAGCTTCAAGATGAAGAATGCCCTCTGCTTACTGCTGCTCTCATTCAGTCTACAGCatataaaatgtcaaaatatggagTCGATTGAAAGCTCAGTTCAGAAGAAGCCTGGAGAAACTCTGACTCTGTCCTGTAGAGGATCTGGGTTCAGCTTTGACTGCTGTAGCATGCACTGGATCAGACAACAAGCTGGAAAACCTCTTGTGTGGATTGGATATGTTTCTAATGGTGGTGTTAGCCAAAACTATGCTGAATCTTTCAAAGGCCGAACTGAAATTACCAGAGATAATTCAAAGAGTATGGTATATCTGAAACTATCAGGCCTGACAGCGGAAGACTCAGCCATGTATTACTGTGCAAGACAAT

Function

symbol description
ighv4-8 Predicted to enable antigen binding activity and immunoglobulin receptor binding activity. Predicted to be involved in several processes, including activation of immune response; defense response to other organism; and phagocytosis. Predicted to be part of immunoglobulin complex, circulating. Predicted to be active in external side of plasma membrane.

GO:

id name namespace
GO:0045087 innate immune response biological_process
GO:0050871 positive regulation of B cell activation biological_process
GO:0006910 phagocytosis, recognition biological_process
GO:0006911 phagocytosis, engulfment biological_process
GO:0042742 defense response to bacterium biological_process
GO:0006958 complement activation, classical pathway biological_process
GO:0050853 B cell receptor signaling pathway biological_process
GO:0009897 external side of plasma membrane cellular_component
GO:0042571 immunoglobulin complex, circulating cellular_component
GO:0034987 immunoglobulin receptor binding molecular_function
GO:0003823 antigen binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040514-13 Predicted to enable antigen binding activity and immunoglobulin receptor binding activity. Predicted to be involved in several processes, including activation of immune response; defense response to other organism; and phagocytosis. Predicted to be part of immunoglobulin complex, circulating. Predicted to be active in external side of plasma membrane.

Ensembl:

ensembl_id ENSDARG00000096289

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00051741 True 371 mRNA 0.43 2 34086948 34087394

Neighbor

gene id symbol gene type direction distance location
XLOC_026558 BX649502.11 coding downstream 465 34086041 ~ 34086483 (-)
XLOC_026557 ighv4-9 coding downstream 1612 34084861 ~ 34085336 (-)
XLOC_026556 ighv4-3 coding downstream 2561 34081851 ~ 34084387 (-)
XLOC_026555 ighv5-8 coding downstream 5925 34080570 ~ 34081023 (-)
XLOC_026553 ighv6-2 coding downstream 8769 34074278 ~ 34078179 (-)
XLOC_026560 ighv4-7 coding upstream 2589 34089983 ~ 34090456 (-)
XLOC_026561 si:dkey-204f11.13 coding upstream 3906 34091300 ~ 34091356 (-)
XLOC_026562 ighv4-6 coding upstream 5064 34092458 ~ 34092914 (-)
XLOC_026563 ighv6-1 coding upstream 8120 34095514 ~ 34103365 (-)
XLOC_026564 ighv4-5 coding upstream 9119 34096513 ~ 34096987 (-)
XLOC_026547 BX649502.5 non-coding downstream 22012 34063955 ~ 34064936 (-)
XLOC_026544 BX649502.10 non-coding downstream 28231 34058679 ~ 34058717 (-)
XLOC_026539 BX649502.4 non-coding downstream 38295 34048205 ~ 34048653 (-)
XLOC_026538 BX649502.6 non-coding downstream 39332 34047179 ~ 34047616 (-)
XLOC_026572 NA non-coding upstream 52243 34139637 ~ 34141181 (-)
XLOC_026580 NA non-coding upstream 553654 34641048 ~ 34641973 (-)
XLOC_026585 NA non-coding upstream 860008 34947402 ~ 34948061 (-)
XLOC_026588 NA non-coding upstream 1477734 35565128 ~ 35574451 (-)
XLOC_026600 NA non-coding upstream 2232845 36320239 ~ 36323625 (-)

Expression


Co-expression Network