RNA id: TCONS_00051741


Basic Information

Item Value
RNA id TCONS_00051741
length 371
RNA type mRNA
GC content 0.43
exon number 2
gene id XLOC_026559
representative True

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 34086948 ~ 34087394 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CATCACCAGCTTCAAGATGAAGAATGCCCTCTGCTTACTGCTGCTCTCATTCAGTCTACAGCatataaaatgtcaaaatatggagTCGATTGAAAGCTCAGTTCAGAAGAAGCCTGGAGAAACTCTGACTCTGTCCTGTAGAGGATCTGGGTTCAGCTTTGACTGCTGTAGCATGCACTGGATCAGACAACAAGCTGGAAAACCTCTTGTGTGGATTGGATATGTTTCTAATGGTGGTGTTAGCCAAAACTATGCTGAATCTTTCAAAGGCCGAACTGAAATTACCAGAGATAATTCAAAGAGTATGGTATATCTGAAACTATCAGGCCTGACAGCGGAAGACTCAGCCATGTATTACTGTGCAAGACAAT

Function

GO:

id name namespace
GO:0045087 innate immune response biological_process
GO:0050871 positive regulation of B cell activation biological_process
GO:0006910 phagocytosis, recognition biological_process
GO:0006911 phagocytosis, engulfment biological_process
GO:0042742 defense response to bacterium biological_process
GO:0006958 complement activation, classical pathway biological_process
GO:0050853 B cell receptor signaling pathway biological_process
GO:0009897 external side of plasma membrane cellular_component
GO:0042571 immunoglobulin complex, circulating cellular_component
GO:0034987 immunoglobulin receptor binding molecular_function
GO:0003823 antigen binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040514-13 Predicted to enable antigen binding activity and immunoglobulin receptor binding activity. Predicted to be involved in several processes, including activation of immune response; defense response to other organism; and phagocytosis. Predicted to be part of immunoglobulin complex, circulating. Predicted to be active in external side of plasma membrane.

Ensembl:

ensembl_id ENSDART00000151344

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00051677 lncRNA downstream 148127 33936453 ~ 33938821 (-) True XLOC_026512
TCONS_00051675 lncRNA downstream 151510 33922620 ~ 33935438 (-) False XLOC_026512
TCONS_00053065 lncRNA downstream 167753 33918566 ~ 33919195 (-) True XLOC_026511
TCONS_00051667 lncRNA downstream 396194 33681518 ~ 33690754 (-) True XLOC_026509
TCONS_00051659 lncRNA downstream 649216 33435754 ~ 33437732 (-) True XLOC_026506
TCONS_00053066 lncRNA upstream 52243 34139637 ~ 34141181 (-) True XLOC_026572
TCONS_00051762 lncRNA upstream 92413 34179807 ~ 34180432 (-) False XLOC_026573
TCONS_00051763 lncRNA upstream 92413 34179807 ~ 34180451 (-) True XLOC_026573
TCONS_00051771 lncRNA upstream 382760 34470154 ~ 34477363 (-) False XLOC_026575
TCONS_00051773 lncRNA upstream 438548 34525942 ~ 34546406 (-) False XLOC_026575
TCONS_00051739 mRNA downstream 1612 34084861 ~ 34085336 (-) True XLOC_026557
TCONS_00051737 mRNA downstream 2561 34081851 ~ 34084387 (-) False XLOC_026556
TCONS_00051738 mRNA downstream 4665 34081859 ~ 34082283 (-) True XLOC_026556
TCONS_00051736 mRNA downstream 5925 34080570 ~ 34081023 (-) True XLOC_026555
TCONS_00051732 mRNA downstream 8769 34074278 ~ 34078179 (-) False XLOC_026553
TCONS_00051742 mRNA upstream 1458 34088852 ~ 34089310 (-) False XLOC_026515
TCONS_00051743 mRNA upstream 2589 34089983 ~ 34090456 (-) True XLOC_026560
TCONS_00051744 mRNA upstream 3906 34091300 ~ 34091356 (-) True XLOC_026561
TCONS_00051745 mRNA upstream 5064 34092458 ~ 34092914 (-) True XLOC_026562
TCONS_00051746 mRNA upstream 7366 34094760 ~ 34095221 (-) True XLOC_026515
TCONS_00051740 other downstream 465 34086041 ~ 34086483 (-) True XLOC_026558
TCONS_00051725 other downstream 22012 34063955 ~ 34064936 (-) True XLOC_026547
TCONS_00051722 other downstream 28231 34058679 ~ 34058717 (-) True XLOC_026544
TCONS_00051716 other downstream 38295 34048205 ~ 34048653 (-) True XLOC_026539
TCONS_00051715 other downstream 39332 34047179 ~ 34047616 (-) True XLOC_026538
TCONS_00051752 other upstream 15563 34102957 ~ 34103365 (-) True XLOC_026563
TCONS_00051772 other upstream 438548 34525942 ~ 34546399 (-) False XLOC_026575
TCONS_00051781 other upstream 564916 34652310 ~ 34656737 (-) False XLOC_026581
TCONS_00051782 other upstream 565578 34652972 ~ 34654998 (-) False XLOC_026581
TCONS_00051787 other upstream 656185 34743579 ~ 34753541 (-) True XLOC_026582

Expression Profile

//