RNA id: TCONS_00051738


Basic Information

Item Value
RNA id TCONS_00051738
length 343
RNA type mRNA
GC content 0.43
exon number 2
gene id XLOC_026556
representative True

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 34081851 ~ 34084387 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

atgatctcttcATCTCTAGTGCTGTTTCTGGCAGTAGTATCCTGTGTTGATTCATATGAACTCACTCAGTCTGATTCTCTGACTGTCCGTCCTGATGACTCTCTCACTATCAACTGCAAAGTCTCATATTCAGTCACAGACTACAGCACAGCCTGGATTCGTCAGCCTGCAGGAAAAGCTCTGGAGTGGATTGGAGTGATCTACTATAATGGCAACTTAGACTACAAGGATTCTCTAAAAAGCAAGTTCAGCATCACCAGAGACACTTCCAGTAACACAATAACACTGCAAGGAAAGAATGTGAAAGCTGAAGACACAGCTGTGTATTATTGTGCCAGACGTA

Function

GO:

id name namespace
GO:0045087 innate immune response biological_process
GO:0050871 positive regulation of B cell activation biological_process
GO:0006910 phagocytosis, recognition biological_process
GO:0006911 phagocytosis, engulfment biological_process
GO:0042742 defense response to bacterium biological_process
GO:0006958 complement activation, classical pathway biological_process
GO:0050853 B cell receptor signaling pathway biological_process
GO:0009897 external side of plasma membrane cellular_component
GO:0042571 immunoglobulin complex, circulating cellular_component
GO:0034987 immunoglobulin receptor binding molecular_function
GO:0003823 antigen binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040514-9 Predicted to enable antigen binding activity and immunoglobulin receptor binding activity. Predicted to be involved in several processes, including activation of immune response; defense response to other organism; and phagocytosis. Predicted to be part of immunoglobulin complex, circulating. Predicted to be active in external side of plasma membrane.

Ensembl:

ensembl_id ENSDART00000151264

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00051677 lncRNA downstream 143038 33936453 ~ 33938821 (-) True XLOC_026512
TCONS_00051675 lncRNA downstream 146421 33922620 ~ 33935438 (-) False XLOC_026512
TCONS_00053065 lncRNA downstream 162664 33918566 ~ 33919195 (-) True XLOC_026511
TCONS_00051667 lncRNA downstream 391105 33681518 ~ 33690754 (-) True XLOC_026509
TCONS_00051659 lncRNA downstream 644127 33435754 ~ 33437732 (-) True XLOC_026506
TCONS_00053066 lncRNA upstream 57354 34139637 ~ 34141181 (-) True XLOC_026572
TCONS_00051762 lncRNA upstream 97524 34179807 ~ 34180432 (-) False XLOC_026573
TCONS_00051763 lncRNA upstream 97524 34179807 ~ 34180451 (-) True XLOC_026573
TCONS_00051771 lncRNA upstream 387871 34470154 ~ 34477363 (-) False XLOC_026575
TCONS_00051773 lncRNA upstream 443659 34525942 ~ 34546406 (-) False XLOC_026575
TCONS_00051736 mRNA downstream 836 34080570 ~ 34081023 (-) True XLOC_026555
TCONS_00051732 mRNA downstream 3680 34074278 ~ 34078179 (-) False XLOC_026553
TCONS_00051735 mRNA downstream 5052 34076378 ~ 34076807 (-) True XLOC_026554
TCONS_00051734 mRNA downstream 5820 34075573 ~ 34076039 (-) True XLOC_026553
TCONS_00051733 mRNA downstream 7053 34074289 ~ 34074806 (-) False XLOC_026553
TCONS_00051739 mRNA upstream 2578 34084861 ~ 34085336 (-) True XLOC_026557
TCONS_00051741 mRNA upstream 4665 34086948 ~ 34087394 (-) True XLOC_026559
TCONS_00051742 mRNA upstream 6569 34088852 ~ 34089310 (-) False XLOC_026515
TCONS_00051743 mRNA upstream 7700 34089983 ~ 34090456 (-) True XLOC_026560
TCONS_00051744 mRNA upstream 9017 34091300 ~ 34091356 (-) True XLOC_026561
TCONS_00051725 other downstream 16923 34063955 ~ 34064936 (-) True XLOC_026547
TCONS_00051722 other downstream 23142 34058679 ~ 34058717 (-) True XLOC_026544
TCONS_00051716 other downstream 33206 34048205 ~ 34048653 (-) True XLOC_026539
TCONS_00051715 other downstream 34243 34047179 ~ 34047616 (-) True XLOC_026538
TCONS_00051712 other downstream 43978 34037481 ~ 34037881 (-) True XLOC_026535
TCONS_00051740 other upstream 3758 34086041 ~ 34086483 (-) True XLOC_026558
TCONS_00051752 other upstream 20674 34102957 ~ 34103365 (-) True XLOC_026563
TCONS_00051772 other upstream 443659 34525942 ~ 34546399 (-) False XLOC_026575
TCONS_00051781 other upstream 570027 34652310 ~ 34656737 (-) False XLOC_026581
TCONS_00051782 other upstream 570689 34652972 ~ 34654998 (-) False XLOC_026581

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
rainbow trout (Oncorhynchus mykiss) TU1275315 False 925 TUCP 0.42 2 NC_048576.1 84404815 ~ 84405876 (-)
striped catfish (Pangasianodon hypophthalmus) LOC117598924 True 351 V_segment 0.46 2 NC_047607.1 22379243 ~ 22379686 (+)
mexican tetra (Astyanax mexicanus) LOC111190165 True 492 V_segment 0.41 2 NW_019172441.1 260877 ~ 261488 (+)