Fish Transcriptome and Expression Database

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model fish

XLOC_026561 (si:dkey-204f11.13)

Basic Information

Item	Value
gene id	XLOC_026561
gene name	si:dkey-204f11.13
gene type	coding
species	zebrafish (Danio rerio)
category of species	model fish

Chromosome Information

Item	Value
chromosome id	NC_007114.7
NCBI id	CM002887.2
chromosome length	62628489
location	34091300 ~ 34091356 (-)
genome version	GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00051744
ATGCAGACTGAGATCAGAGCTGTGTATTACTGCGCCAGAAAGAAATACCACAGTGAT

Function

GO: NA

KEGG: NA

ZFIN:

id	description
ZDB-GENE-040724-169	No description available

Ensembl:

ensembl_id

ENSDARG00000095516

RNA

RNA id	representative	length	rna type	GC content	exon number	start site	end site
TCONS_00051744	True	57	mRNA	0.44	1	34091300	34091356

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.

Neighbor

gene id	symbol	gene type	direction	distance	location
XLOC_026560	ighv4-7	coding	downstream	844	34089983 ~ 34090456 (-)
XLOC_026559	ighv4-8	coding	downstream	3906	34086948 ~ 34087394 (-)
XLOC_026558	BX649502.11	coding	downstream	4817	34086041 ~ 34086483 (-)
XLOC_026557	ighv4-9	coding	downstream	5964	34084861 ~ 34085336 (-)
XLOC_026556	ighv4-3	coding	downstream	6913	34081851 ~ 34084387 (-)
XLOC_026562	ighv4-6	coding	upstream	1102	34092458 ~ 34092914 (-)
XLOC_026563	ighv6-1	coding	upstream	4158	34095514 ~ 34103365 (-)
XLOC_026564	ighv4-5	coding	upstream	5157	34096513 ~ 34096987 (-)
XLOC_026565	ighv5-3	coding	upstream	6903	34098259 ~ 34098731 (-)
XLOC_026566	ighv5-2	coding	upstream	10275	34101631 ~ 34102075 (-)
XLOC_026547	BX649502.5	non-coding	downstream	26364	34063955 ~ 34064936 (-)
XLOC_026544	BX649502.10	non-coding	downstream	32583	34058679 ~ 34058717 (-)
XLOC_026539	BX649502.4	non-coding	downstream	42647	34048205 ~ 34048653 (-)
XLOC_026538	BX649502.6	non-coding	downstream	43684	34047179 ~ 34047616 (-)
XLOC_026572	NA	non-coding	upstream	48281	34139637 ~ 34141181 (-)
XLOC_026580	NA	non-coding	upstream	549692	34641048 ~ 34641973 (-)
XLOC_026585	NA	non-coding	upstream	856046	34947402 ~ 34948061 (-)
XLOC_026588	NA	non-coding	upstream	1473772	35565128 ~ 35574451 (-)
XLOC_026600	NA	non-coding	upstream	2228883	36320239 ~ 36323625 (-)

Expression

Co-expression Network