RNA id: TCONS_00051745


Basic Information

Item Value
RNA id TCONS_00051745
length 380
RNA type mRNA
GC content 0.43
exon number 2
gene id XLOC_026562
representative True

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 34092458 ~ 34092914 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TGCTTCTGATTGGATCAGGATCATTAACATCAGCCTCAAGATGAAGAATGCTCTCTGCTTACTGCTGCTCTTGTTAAGTCTACAGCGTATAAAATGTGAAAGTATGGAGTCAATTGAAAGCTCAGTGCAGAAAAAGCCTGGAGAAACTCTGACTCTGTCCTGTAGAGGATCCGGGTTCAGCTTTAGCTCCTATTACATGCACTGGATTAGACAACAAGCTGGAAAACCTCTTGTGTGGATTGGAGGCACTGGCTATGGCTATGCTGAGTCCTTCAAAGGAAGAGCTGAAATCACCAAAGATAATTCAAAGAGTATGACATATCTGAAACTATCAGGCCTCACAGCAGAAGATTCAGCCGTGTATTACTGTGCAAGACAAT

Function

GO:

id name namespace
GO:0045087 innate immune response biological_process
GO:0050871 positive regulation of B cell activation biological_process
GO:0006910 phagocytosis, recognition biological_process
GO:0006911 phagocytosis, engulfment biological_process
GO:0042742 defense response to bacterium biological_process
GO:0006958 complement activation, classical pathway biological_process
GO:0050853 B cell receptor signaling pathway biological_process
GO:0009897 external side of plasma membrane cellular_component
GO:0042571 immunoglobulin complex, circulating cellular_component
GO:0034987 immunoglobulin receptor binding molecular_function
GO:0003823 antigen binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030924-7 Predicted to enable antigen binding activity and immunoglobulin receptor binding activity. Predicted to be involved in several processes, including activation of immune response; defense response to other organism; and phagocytosis. Predicted to be part of immunoglobulin complex, circulating. Predicted to be active in external side of plasma membrane.

Ensembl:

ensembl_id ENSDART00000151077

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00051677 lncRNA downstream 153637 33936453 ~ 33938821 (-) True XLOC_026512
TCONS_00051675 lncRNA downstream 157020 33922620 ~ 33935438 (-) False XLOC_026512
TCONS_00053065 lncRNA downstream 173263 33918566 ~ 33919195 (-) True XLOC_026511
TCONS_00051667 lncRNA downstream 401704 33681518 ~ 33690754 (-) True XLOC_026509
TCONS_00051659 lncRNA downstream 654726 33435754 ~ 33437732 (-) True XLOC_026506
TCONS_00053066 lncRNA upstream 46723 34139637 ~ 34141181 (-) True XLOC_026572
TCONS_00051762 lncRNA upstream 86893 34179807 ~ 34180432 (-) False XLOC_026573
TCONS_00051763 lncRNA upstream 86893 34179807 ~ 34180451 (-) True XLOC_026573
TCONS_00051771 lncRNA upstream 377240 34470154 ~ 34477363 (-) False XLOC_026575
TCONS_00051773 lncRNA upstream 433028 34525942 ~ 34546406 (-) False XLOC_026575
TCONS_00051744 mRNA downstream 1102 34091300 ~ 34091356 (-) True XLOC_026561
TCONS_00051743 mRNA downstream 2002 34089983 ~ 34090456 (-) True XLOC_026560
TCONS_00051742 mRNA downstream 3148 34088852 ~ 34089310 (-) False XLOC_026515
TCONS_00051741 mRNA downstream 5064 34086948 ~ 34087394 (-) True XLOC_026559
TCONS_00051739 mRNA downstream 7122 34084861 ~ 34085336 (-) True XLOC_026557
TCONS_00051746 mRNA upstream 1846 34094760 ~ 34095221 (-) True XLOC_026515
TCONS_00051747 mRNA upstream 2600 34095514 ~ 34103123 (-) False XLOC_026563
TCONS_00051748 mRNA upstream 3599 34096513 ~ 34096987 (-) True XLOC_026564
TCONS_00051749 mRNA upstream 5345 34098259 ~ 34098731 (-) True XLOC_026565
TCONS_00051750 mRNA upstream 7358 34100272 ~ 34100700 (-) False XLOC_026563
TCONS_00051740 other downstream 5975 34086041 ~ 34086483 (-) True XLOC_026558
TCONS_00051725 other downstream 27522 34063955 ~ 34064936 (-) True XLOC_026547
TCONS_00051722 other downstream 33741 34058679 ~ 34058717 (-) True XLOC_026544
TCONS_00051716 other downstream 43805 34048205 ~ 34048653 (-) True XLOC_026539
TCONS_00051715 other downstream 44842 34047179 ~ 34047616 (-) True XLOC_026538
TCONS_00051752 other upstream 10043 34102957 ~ 34103365 (-) True XLOC_026563
TCONS_00051772 other upstream 433028 34525942 ~ 34546399 (-) False XLOC_026575
TCONS_00051781 other upstream 559396 34652310 ~ 34656737 (-) False XLOC_026581
TCONS_00051782 other upstream 560058 34652972 ~ 34654998 (-) False XLOC_026581
TCONS_00051787 other upstream 650665 34743579 ~ 34753541 (-) True XLOC_026582

Expression Profile

//