RNA id: TCONS_00051747


Basic Information

Item Value
RNA id TCONS_00051747
length 339
RNA type mRNA
GC content 0.47
exon number 3
gene id XLOC_026563
representative False

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 34095514 ~ 34103365 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GACAACAAGCTGGAAAACCTCTTGTCTGTGGTTAAAAAACCAGGAGAGTCCCATTCACTTACATGTTCAATAGCAGGATTTACATTCAGTAGCCTTTATTTACACTGGATCAGACAGAGCCCTGGAAAAGCACTGGAGTGGATTGCATACATCAGCACACAAAGTTCTCCTATTTACTATTCTCAGTCAGTCCAGGGAAGGTTCACAGTGTCCAGAGATGATTCCAGCAGTCAGCTGTACCTGCagatgaacaacctcaagactGAAGACACTGCTGTCTATTACTGTggctctcggaccttttgggctcagggctctctcccgggacagcatgcctaa

Function

GO:

id name namespace
GO:0045087 innate immune response biological_process
GO:0050871 positive regulation of B cell activation biological_process
GO:0006910 phagocytosis, recognition biological_process
GO:0006911 phagocytosis, engulfment biological_process
GO:0042742 defense response to bacterium biological_process
GO:0006958 complement activation, classical pathway biological_process
GO:0050853 B cell receptor signaling pathway biological_process
GO:0009897 external side of plasma membrane cellular_component
GO:0042571 immunoglobulin complex, circulating cellular_component
GO:0034987 immunoglobulin receptor binding molecular_function
GO:0003823 antigen binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040514-23 Predicted to enable antigen binding activity and immunoglobulin receptor binding activity. Predicted to be involved in several processes, including activation of immune response; defense response to other organism; and phagocytosis. Predicted to be part of immunoglobulin complex, circulating. Predicted to be active in external side of plasma membrane.

Ensembl:

ensembl_id ENSDART00000180590

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00051677 lncRNA downstream 156693 33936453 ~ 33938821 (-) True XLOC_026512
TCONS_00051675 lncRNA downstream 160076 33922620 ~ 33935438 (-) False XLOC_026512
TCONS_00053065 lncRNA downstream 176319 33918566 ~ 33919195 (-) True XLOC_026511
TCONS_00051667 lncRNA downstream 404760 33681518 ~ 33690754 (-) True XLOC_026509
TCONS_00051659 lncRNA downstream 657782 33435754 ~ 33437732 (-) True XLOC_026506
TCONS_00053066 lncRNA upstream 36514 34139637 ~ 34141181 (-) True XLOC_026572
TCONS_00051762 lncRNA upstream 76684 34179807 ~ 34180432 (-) False XLOC_026573
TCONS_00051763 lncRNA upstream 76684 34179807 ~ 34180451 (-) True XLOC_026573
TCONS_00051771 lncRNA upstream 367031 34470154 ~ 34477363 (-) False XLOC_026575
TCONS_00051773 lncRNA upstream 422819 34525942 ~ 34546406 (-) False XLOC_026575
TCONS_00051683 mRNA downstream 293 33965579 ~ 34095221 (-) False XLOC_026515
TCONS_00051746 mRNA downstream 293 34094760 ~ 34095221 (-) True XLOC_026515
TCONS_00051745 mRNA downstream 2600 34092458 ~ 34092914 (-) True XLOC_026562
TCONS_00051744 mRNA downstream 4158 34091300 ~ 34091356 (-) True XLOC_026561
TCONS_00051743 mRNA downstream 5058 34089983 ~ 34090456 (-) True XLOC_026560
TCONS_00051753 mRNA upstream 2923 34106046 ~ 34106471 (-) True XLOC_026567
TCONS_00051754 mRNA upstream 4074 34107197 ~ 34107685 (-) True XLOC_026568
TCONS_00051755 mRNA upstream 10287 34113410 ~ 34113838 (-) True XLOC_026569
TCONS_00051756 mRNA upstream 12315 34115438 ~ 34115886 (-) True XLOC_026570
TCONS_00051757 mRNA upstream 26382 34129505 ~ 34136778 (-) False XLOC_026571
TCONS_00051740 other downstream 9031 34086041 ~ 34086483 (-) True XLOC_026558
TCONS_00051725 other downstream 30578 34063955 ~ 34064936 (-) True XLOC_026547
TCONS_00051722 other downstream 36797 34058679 ~ 34058717 (-) True XLOC_026544
TCONS_00051716 other downstream 46861 34048205 ~ 34048653 (-) True XLOC_026539
TCONS_00051715 other downstream 47898 34047179 ~ 34047616 (-) True XLOC_026538
TCONS_00051772 other upstream 422819 34525942 ~ 34546399 (-) False XLOC_026575
TCONS_00051781 other upstream 549187 34652310 ~ 34656737 (-) False XLOC_026581
TCONS_00051782 other upstream 549849 34652972 ~ 34654998 (-) False XLOC_026581
TCONS_00051787 other upstream 640456 34743579 ~ 34753541 (-) True XLOC_026582
TCONS_00051789 other upstream 664418 34767541 ~ 34775954 (-) False XLOC_026583