XLOC_029924 (dre-mir-130b)


Basic Information

Item Value
gene id XLOC_029924
gene name dre-mir-130b
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 13299331 ~ 13299414 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00058617
cTGTTGCCTGACACTCTTTCCCTGTTGCACTACTGTGGGAGCTGCAGCAAAGCAGTGCAATAATGAAAGGGCATCAGTCCACTG

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000080347

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00058617 True 84 miRNA 0.51 1 13299331 13299414

Neighbor

gene id symbol gene type direction distance location
XLOC_029923 dre-mir-454b coding upstream 2909 13296307 ~ 13296422 (+)
XLOC_029922 NA coding upstream 6857 13291009 ~ 13292474 (+)
XLOC_029921 dre-mir-301b coding upstream 9898 13289353 ~ 13289433 (+)
XLOC_029920 dre-mir-130c-2 coding upstream 10425 13288828 ~ 13288906 (+)
XLOC_029919 CR933528.1 coding upstream 49465 13243446 ~ 13249866 (+)
XLOC_029925 ydjc coding downstream 8725 13308139 ~ 13335624 (+)
XLOC_029926 ccl19a.1 coding downstream 54452 13353866 ~ 13392962 (+)
XLOC_029927 ccl19a.2 coding downstream 74179 13373593 ~ 13376424 (+)
XLOC_029928 tctn2 coding downstream 95129 13394543 ~ 13427349 (+)
XLOC_029929 sec14l8 coding downstream 128412 13427826 ~ 13469307 (+)
XLOC_029918 NA non-coding upstream 200875 13096467 ~ 13098456 (+)
XLOC_029932 NA non-coding downstream 303815 13603229 ~ 13616296 (+)
XLOC_029934 NA non-coding downstream 366404 13665818 ~ 13676027 (+)
XLOC_029936 NA non-coding downstream 798928 14098342 ~ 14121733 (+)
XLOC_029937 NA non-coding downstream 1027918 14327332 ~ 14330018 (+)
XLOC_029938 BX927201.1 non-coding downstream 1342738 14642152 ~ 14642269 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G283006 NA non-coding CI01000071 null 4471619 ~ 4472426 (+)
rainbow trout (Oncorhynchus mykiss) G1021120 NA non-coding NC_048575.1 CM023229.2 78609099 ~ 78609458 (-)
eurasian perch (Perca fluviatilis) G109656 NA non-coding NC_053121.1 CM020918.1 36758212 ~ 36758838 (+)
bowfin (Amia calva) G117557 NA non-coding CM030135.1 CM030135.1 15627339 ~ 15627719 (+)
tiger barb (Puntius tetrazona) G99598 ppp2ca,LOC107750370,LOC108439805,LOC107594878,LOC105026079 non-coding NC_056712.1 CM032081.1 13313874 ~ 13314341 (-)
mexican tetra (Astyanax mexicanus) G323979 NA non-coding NW_019172901.1 APWO02000130.1 225393 ~ 225827 (+)