XLOC_036010 (zgc:56525)


Basic Information

Item Value
gene id XLOC_036010
gene name zgc:56525
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 49092039 ~ 49115695 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00070520
TTCTAGACAAACGCTGCTGTTTGTTGCGTTTTCATCCCGGAAAAAGTGACGAGATGCACAGACAGAACGAACAGCTGGAGttgatggagaaaacacaccaCAGACAGCAGGAGAACGCTATCAACAGCTGGAGACAGGAAAAAGAGAATCTGCAGCTCAACATTTCCTCCAGTGCTAAAGCAGTACAAAACATGAAGAACCGTATGAAGTCGTTACTGGAGGATGTGAATAAGATGCAGAGTGAACTGAAGTCCTGTCATAGTAGTATGGACACGCTCACAAAGAAAGCCAACAGTGACAAgACTCGGTGTAACAAAGAAATTGAGGCAACAAAAGAGGAATGCAGTGTGAAGATAGCAGCTGCCAAACAAGAGAAACTCAAGACGGCTGAAAAGGTGGATccacagGATGCTGATGGTCCCGAGCAGAAAGTCTTGAAAGCCAAATCTGATGTTCTCGCTTCAAACGATT
>TCONS_00070521
GGAAAAAGTGTCGAGATGTCCATGTTTCATCCCTTCTCCTGACGACAGCTTTCACAGTGAACGCAGAAAGCCCTTTTGTAAGGTGTTTGTGATCAAGCATGATGGGTGCTCTGGGGAACGGGCGACGTGGCGGACGCTCTCCATCTCTGCTGATGGCGGCGCTCATCTCCTGCATCCTCCTGCTCGCCTTCAACTACTGGGTCTCCAACTCCAGAAACGTAGAGCTCCAGAGCAAGATATTGGAGCTGGAGGACCGCATTCGGCTGCTGTCAGCAGACCGGGAAAGAGAAGAGCAGAGCAAGCTGAAAGCAGAGGACGAGATGCACAGACAGAACGAACAGCTGGAGttgatggagaaaacacaccaCAGACAGCAGGAGAACGCTATCAACAGCTGGAGACAGGAAAAAGAGAATCTGCAGCTCAACATTTCCTCCAGTGCTAAAGCAGTACAAAACATGAAGAACCGTATGAAGTCGTTACTGGAGGATGTGAATAAGATGCAGAGTGAACTGAAGTCCTGTCATAGTAGTATGGACACGCTCACAAAGAAAGCCAACAGTGACAAgACTCGGTGTAACAAAGAAATTGAGGCAACAAAAGAGGAATGCAGTGTGAAGATAGCAGCTGCCAAACAAGAGAAACTCAAGACGGCTGAAAAGGTGGATccacagGATGCTGATGGTCCCGAGCAGAAAGTCTTGAAAGCCAAATCTGATGTTCTCGCTTCAAACGATTTAAATAAAAACCCAGCAGAACCTCCAAACGGAAAACCAGATGTGGATTCACCATCCAATCTCGATGCTCAGGTTGAAACCAATGAGTTGGTAGTGGAGAAAGATGCTAAAGATGCTGTGATTTTACAAGACACGCCTATTGCTGCCTCCAAACTGACCAACAAGAGTGAGACCCTCAAAAAGCCAGCCTATGAAGCGGTTGCAGAAGCAGTGGAGGACATTAAAGAACCGGCTCCAAAGGATGCAGAGGCTGTGCTGGATGAAGCAGATATTTTagaaccgaaggaaaatgaggcTGGGATTGGAGATGCCAATGAGGAAGATGATGTTGGGATTGGAGATGCGAATCAGGAAGAAGATGATGAGGATTTAAAACTGAAAGCCGGGGATCTGAAGGAGGAAGATGCTGCAGTTGGGAAGGAAGATGCCATCATGTACGACAACGAGGGCGAGATCGAGAAACAGCTCTCTCAGATTAAAGATGAAAACCAAGGCGCAGGTCAAGATCTAGAGGACGATGTGGCTAATTATAACGGAGATGACGAGAACCAGCCTGAGTCTGAGGATGAGAAGCAGGCAGAGCTGGCAGggatgtaaaaaaacaccttcaGCTGAACATTACCGTGTTTTTACCCTCCCAGCAGCTCAGCTATAAGGTGGGAGACCTACACTGCTGTAAAGACTGATGTGTGCTGGACAAAACTGCACTACTGGGTAATGAAGGATATGAGTTTGTCTCATACGCCTTACAGGACAACAGACATGttgaaaacttactttttctagGTCTGATTTTAGATTCAGCTTGAATGAAACTACTTATTACGTCGCGCCTTTAAATTAACGAGTCATGATGATGAATTTCCCCTTGTTTTCTGTTACAAAACAACAATGAAACTGAATTTTGAAAGATTTTAATTGCTCAAAAGAACGTGAATATTAAGACGTGTAAACTGAAAGTCTTTGATTGGCTGTAAAACGTTACTTTTATGTTGATTTATATtcattttgtaactttttttttgggaactggaattattattttttttgttcaaaaatgggtttctaaatatatttatgttctaATAAAGTTTTTAGTTGTGTTC
>TCONS_00070522
AAAGCCCTTTTGTAAGGTGTTTGTGATCAAGCATGATGGGTGCTCTGGGGAACGGGCGACGTGGCGGACGCTCTCCATCTCTGCTGATGGCGGCGCTCATCTCCTGCATCCTCCTGCTCGCCTTCAACTACTGGGTCTCCAACTCCAGAAACGTAGAGCTCCAGAGCAAGATATTGGAGCTGGAGGACCGCATTCGGCTGCTGTCAGCAGACCGGGAAAGAGAAGAGCAGAGCAAGCTGAAAGCAGAGGACGAGATGCACAGACAGAACGAACAGCTGGAGttgatggagaaaacacaccaCAGACAGCAGGAGAACGCTATCAACAGCTGGAGACAGGAAAAAGAGAATCTGCAGCTCAACATTTCCTCCAGTGCTAAAGCAGTACAAAACATGAAGAACCGTATGAAGTCGTTACTGGAGGATGTGAATAAGATGCAGAGTGAACTGAAGTCCTGTCATAGTAGTATGGACACGCTCACAAAGAAAGCCAACAGTGACAAgACTCGGTGTAACAAAGAAATTGAGGCAACAAAAGAGGAATGCAGTGTGAAGATAGCAGCTGCCAAACAAGAGAAACTCAAGACGGCTGAAAAGGTGGATccacagGATGCTGATGGTCCCGAGCAGAAAGTCTTGAAAGCCAAATCTGATGTTCTCGCTTCAAACGATTTAAATAAAAACCCAGCAGAACCTCCAAACGGAAAACCAGATGTGGATTCACCATCCAATCTCGATGCTCAGGTTGAAACCAATGAGTTGGTAGTGGAGAAAGATGCTAAAGATGCTGTGATTTTACAAGACACGCCTATTGCTGCCTCCAAACTGACCAACAAGAGTGAGACCCTCAAAAAGCCAGCCTATGAAGCGGTTGCAGAAGCAGTGGAGGACATTAAAGAACCGGCTCCAAAGGATGCAGAGGCTGTGCTGGATGAAGCAGATATTTTagaaccgaaggaaaatgaggcTGGGATTGGAGATGCCAATGAGGAAGATGATGTTGGGATTGGAGATGCGAATCAGGAAGAAGATGATGAGGATTTAAAACTGAAAGCCGGGGATCTGAAGGAGGAAGATGCTGCAGTTGGGAAGGAAGATGCCATCATGTACGACAACGAGGGCGAGATCGAGAAACAGCTCTCTCAGATTAAAGATGAAAACCAAGGCGCAGGTCAAGATCTAGAGGACGATGTGGCTAATTATAACGGAGATGACGAGAACCAGCCTGAGTCTGAGGATGAGAAGCAGGCAGAGCTGGCAGggatgtaaaaaaacaccttcaGCTGAACATTACCGTGTTTTTACCCTCCCAGCAGCTCAGCTATAAGGTGGGAGACCTACACTGCTGTAAAGACTGATGTGTGCTGGACAAAACTGCACTACTGGGTAATGAAGGATATGAGTTTGTCTCATACGCCTTACAGGACAACAGACATGttgaaaacttactttttctagGTCTGATTTTAGATTCAGCTTGAATGAAACTACTTATTACGTCGCGCCTTTAAATTAACGAGTCATGATGATGAATTTCCCCTTGTTTTCTGTTACAAAACAACAATGAAACTGAATTTTGAAAGATTTTAATTGCTCAAAAGAACGTGAATATTAAGACGTGTAAACTGAAAGTCTTTGATTGGCTGTAAAACGTTACTTTTATGTTGATTTATATtcattttgtaactttttttttgggaactggaattattattttttttgttcaaaaatgggtttctaaatatatttatgttctaATAAAGTTTTTAGTTGTGTTCATTTAACTATCGTGTGAGTTTAATGGGTTAAGCGTGTAAATGAGCAATGACTGGCACTTTGTCATGGAATGCTGATCTACTATTTTGCCGCCATTTAAACTGCTGAAGAATGAGGCATATGCTTGTAAGTGGATACGCCCACTTATATTGCACATATTGTGCACACATGCTTTAGCATTGGTCAGTGTGGTAAATTTATTTTACTCTTACTTGTTCTTGTATTAGAAAAGCTTGAAGTCCACATGAACGAGAAGTTGAAATCattttttttcgtattgtgacgcagttcctagagaaacagaataataaatgacaaaacagtgaGCATGGCTTGTTTTTCCAACTGCGAGCTGATTGAATGTAGtgaagttggcatttcattcagaaagatcgggaaaATGGGTTGGAGAAAGTTAttgcaacctaacagactcctcctcctgctcaccatttctgtttgttgtcataacTGACAGCttgaggggcgtggttaagtatattAGCCATGCCCAATTGTGCAAATAGATCATGCTATCAGTGCGTAATTGGATGCTTGAACATTTTGAAAGCACCTAGACattagatattatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatggctatatgaagagagatgAGTTGGaagggatgtcattcctaccgttATAAGTGTGTCATGTCGAATAAGAAATcatccttttaaaaaaatatatagcaccAACCCaacttatatataatttattttttttcaacctTTGACAATTAAGATgaggctatgtatgagaaagtcttatttctgaTAAATATTTGGTCACTATGTCATCATATGTAGATTATAAGTGCACTTTAGAATGTAGTTATGTCTTTTTCTCATCGTCATAAGTTAAAATAACGACGTGCAACAGCTGAATCCTGGAAAATCAaccaaactctgaccaatgtgaggagttTACTCGCACTTGACTTGATTTTGTTCCATTTaaaaactttgccgtgtgaaagcgaaccgcaccaagaacaaaacgCGACATGGTAACAATTATACTCCTGGTTTTGGAACAAACAATCAATATACACCTGTGAAAACACCAAGTTTACAAATTTGCTTTATCAGCCAAATAGTGCTGCAGGATATCCAATCGTGTCTTTGCATtggcttaacatgtaaatcactcacgctcaATGCATCACCTGCGCCTGGTGTGAGAGCACCATAAGTGATGGTTGACGTGAAACTGATTTTCGACACACTGTCGAAATCCTGAAGCGCGGATGTTTTTAAACACCACTTCGAAGTGTTTTGAAATATTAGTATTTAGATATTAGGTTAGTAGCATTCAGTTATTAGCCTAGAGAAATAATCTATTTGCAATTATGTGTAAAAGTGTCAATTTGATAATAGAtcatgaatgtattaaaacatatttaaaaaggcCACAGTAGAGTTTGAAGAAAGCACATTATTGGATCAAGAATCCTTCATTGTGCCATTATGCATTACAGTTGCATATGCATAGGACCCATAATAATTCCTATCAACGCCACCATCTGGGAACAGTAGGAATAGCAGTAGACATTTGCATTTTCCCCATCTGGTGTTTGCCAACTTTACCAGCAGAtggtgtaagtgtgtgtttgaagACCAAAACAACATATATAGAGTTGTTCATTAACAAACACTGGTTTACAGAAAAGGAACAAGCTGTAAGTGTATAATTATCAGGCCCATTATATATGCAGGAAACTAATTAAGACGAATGTTACGTTAACTTTTAATTGTTTGTCTTCTTCCTCTTGTCTTCCTCATGATTATGTAATGCTGAGTTCACACTGGATGATTTTCAAAACTGTTGAATTGCCTTTGTTTTCACACTGAACTATATTGGGTAGCGTTCATTTGCTGGCGTGTTCACATCATAAGATCGGCAACTAAATGATACACTGTTAAATATTAGTGGAAGACAATTGAGTTgaggctatgtatgagaaagtcttatttctgaTATATATTTGGTCACAATGTCACCATATGTAGATTATAAGCACACTTTATAATGTACTTATGTCTTTTTCTCATCGTCATAAGTTAAAACAACGACATGTGACAGCTGAGTGGAATCCTGGAAAATCAaccaaactctgaccaatgtgaggagtttactcgcacgtgacttgttttaataATTCTTTTCTATTTTGAAACTTTGCtatgtgaaagtgaaccgcaccaagaacaaaacgCGACATTGTAACAAATATAATCCCTGTTTTGAATCGAACTCTCACTGCTTTCCATTGATAATGGctcaacattcattaattttcatctgCTTCCATTTAAcatcgcaaaaacggaaatgcttgaagtttctgccaacccgactctacaccataacttttcaatccagatggatggggcaactagtactgcatccaaaatggtaaaaCGGCTTGGAGTAACGATttatgaccaactaaacttcactaaaccacatttctagaactgctcgatcttgcagattcgcactctacaacatcagaaaggtccaacccttcctatctgaacatgcagctcaactcattgttcaagctcttgttctttccagactggactattgcaactctctactaggcgggcttccagctaactctaataaacctcttcagctgctccagaaggcagcagcacgagtggtctttaatgaacctgaAAGaacacatgtcactccgctgctcatccgtttgcactggctgccagttgcagctcgcatcaaattcaaagctctgatgtttgcctacaaagcgacctctggctttgctccttatctgctctcacttttgcagatgtatgtgccctccaggaacttgcgttctgtgaatgaacgttgcctcgtggttccatcccaaagagggaagaaatcgctttcctgaactctcgcattcaatctgcccagttggtggaatgaactccctaactgcatcagaacggcagagtcactcgctgtcttcaggaaacgactaaaaactcaactatttagtctataCTTCACTTTCTAAtttgcaattgcctctctggctctaccgctaactgtactacaaaaaaaaaaaacgttactaacgctttgcttcttacactttacccacctgaaacttgcctacagcacttattcattgttgctcttatagttgtgtaagttgcttccttgtcctcatttgtaagtcgctttggataaaagcgtctgctaaatgactaaatgtacatCCCTATCCCCTAATCCCTTCTAGGGTTTACCCACGGGAGTGTCAATTTTGAAAGGATAAAGGCTGTATGGTTCAAAAAAAGGTTATTTATTGGAACACACTTCTGCATCATCTTAGTGAGACGAGCAACGAGGAGTGTCATCATCATACTTTTTAGCTGCTGGTTGAGACCAAAACACACAATTGGAAGGATGATTGTACAttgtgctgtatttatttatttatctatccatctatgtatgtttttagcattttattatatttgtaaatattttatttagaactCATAAATATTATAGTAGTAGCCT

Function

GO:

id name namespace
GO:0048545 response to steroid hormone biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-1060 Acts upstream of or within response to steroid hormone. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in Golgi apparatus. Is expressed in ovary. Orthologous to human GOLM1 (golgi membrane protein 1).

Ensembl:

ensembl_id ENSDARG00000025858

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00070520 False 471 processed_transcript 0.45 6 49092039 49105051
TCONS_00070521 False 1843 mRNA 0.44 10 49092077 49112036
TCONS_00070522 True 5436 mRNA 0.40 9 49096486 49115695

Neighbor

gene id symbol gene type direction distance location
XLOC_036009 ddx51 coding upstream 2657 49065348 ~ 49089382 (+)
XLOC_036008 NA coding upstream 28193 49061001 ~ 49063846 (+)
XLOC_036007 aak1a coding upstream 47780 48965767 ~ 49044259 (+)
XLOC_036006 rer1 coding upstream 130634 48942470 ~ 48961405 (+)
XLOC_036004 tp73 coding upstream 156563 48848200 ~ 48935476 (+)
XLOC_036011 rad21l1 coding downstream 1811 49117506 ~ 49140645 (+)
XLOC_036012 snpha coding downstream 34212 49149907 ~ 49155185 (+)
XLOC_036013 NA coding downstream 85617 49201312 ~ 49207469 (+)
XLOC_036014 NA coding downstream 106419 49222114 ~ 49231343 (+)
XLOC_036015 NA coding downstream 192941 49308636 ~ 49310816 (+)
XLOC_036005 NA non-coding upstream 181211 48910307 ~ 48910828 (+)
XLOC_036002 NA non-coding upstream 339763 48750253 ~ 48752276 (+)
XLOC_036001 NA non-coding upstream 345396 48731449 ~ 48746643 (+)
XLOC_036000 BX323876.1 non-coding upstream 398785 48691469 ~ 48693254 (+)
XLOC_036016 BX537103.1 non-coding downstream 263195 49378890 ~ 49380303 (+)
XLOC_036019 NA non-coding downstream 500801 49616496 ~ 49623714 (+)

Expression


Co-expression Network