LOC110502091 (LOC106582258)


Basic Information

Item Value
gene id LOC110502091
gene name LOC106582258
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 31206388 ~ 31237363 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036959111.1
GGCAGGGCCCCTAAAAGGTGTGGGTATCATACATCTTCTGTCTCACTCCTGTACCTCTGTTTGGTTAGGACTGGATTCTCAAATCCAATGGGGGAAATATCCAGCTGAGGATTCACACCTCAATAAAACTACCCACAGCATTGTCTTGTCAACCTAAAGAGTTTAACTTAAAATCACACTTCAGCGAACCTGAAACCCCTCCGTGTGAAACGAAGTGAAGAGGAGCATCTTGGGTTTATAATCTCTAAGCTATGGATTGGAGTCAGAGGTTGCAGCTCTTGCTCTTCTCACTCCTCTGTCTCACTGGCAACTCCAAGGCAGTAGGAGAGCTCTGTGTGGACAAAGGACGAGAGACTGAGTGGGTCTTTTCAGTTTCCGGTGATGCTGCCATGTTGACATCCACCCTGTTGGACCTCAACATGTCTGACAACCACAGCATCCCCTATAACATCTCATGGTATTACCTAAGGACTGGGACAGAGCTGACCAGGGAGACAGGAAAGACTCTGGTGCAGGGGAAGACACTCTGGATTTTTAACATCACGATGGAAGATGCTGGAGACTATGAGTGTGTTGTGAGACAACCCTCCGAGTGCTACAAGAAGGTTGCCTTACTGATTGTGAACCACACCAACCCAAAAGAATGCGGTCGACCAGAAAAGGCCCAACATGTCCTGACCAACACAGCCACCTCTTTCCTGAACTGCCCATTGAGTGACCAAATCAGGGAAGTAGACAACTACTCCATCCAGTGGTACAAGGGCTGTGAACCCATTGTGGAAGATGATCCCTTGTGGCACAGGTTTAGTTATGTCAGTCACAGTACTATGGAGTTACTCCGAGTAGAAGTGGTCACCCTTGAGGATCATGCATTCTACACCTGCACCATGACCTTTAACTTGGAAGGGCTCAGCGGCAGGATCTCAGAGACCATCAACGGTACGGTGGACGTGGAGTATTGCCTGGAGCCCAAAGTGGTTGAACCTGCCAATGAGATCATCAAAGCAGATTTGGGTTCTTCCTTCAGTAAGATGTGTCGGGTGTTTGTCCCGAGTGTGGGGAATAAACATTGTGCAAATTTGAATTGGATTTCAAGAGAGAACTCAATTTCCAAAATTGTCTCAGAGCGCATCTTTCAGGAATCAGAAAGggagtggagagaagaggagggtgtaTGGTTGGAGCGTAATTTGAATTTCTTGACGGTGGAAGAGGAAGACTTTTCCATCCATTACACGTGTAAGGTTTCCAGCGACAGAGGCAGTCCTTCTGCCTCCTTCACACTACAGCCTACAGATCCAAACAACCTGTTCCCTATTGGGGTACTACTGACTAGTCTGGTATTGGTGTTTACTGTTAGTGTTGTTATTTACCATCGCTTTAAGATTGACATTGTGCTGTCGCTAAGGAGGGTGTTCCCGCTTCTCTACCCAAACACAGACTCTGATGGGAAGCTGTATGATGCGTACGTGGCGTACCCCCGTCTGTTTGGGGATGGGGGCAGGGCCTGTGGAGAGGCAGAGATGTTTGCCCTCCACACGTTGCCCCAGGTTCTGGAGGGGAGGTGTGGCTACAGGCTCTTCATACTGGGCCGGGACAGCCTACCAGGGGAAGccGTAGTAGATGCTGTGGAGGAGAGCATGCTGGCCAGCCGGTGTCTCCTCCTGGTCTACTCTGGCTCTACGTTCTGCAGTGACAGCAGCGGTGTCCTGGAGGCCTGGCAGATGTTCGAGAGGCAGACGGCCATGCACCATGCCCTGCTGGAGGGCTCCCTTAAGGTGGTCCTGGTGGAGCTGGAGGAGGTCACTCCTACACAGCTGGCCCTCTTCCCTGAGTCGGTGCGCCACCTCCGGGAGCGCCAGGGCGCCGTCTGCTGGTGGAAGAGTAGCAGGACAAGGAGGAACAAAGGGTTGAGGTGTGGGAGGTGGAGAAAAGAGGTGGcggagaagagaggggagcaggcttcgccccctctctcctcaccctctcttttCTTGTCCTCACGCTTCTGGAAGGAGTTGAGGTATTATATGCCAGTGAGGGGCATGAGGACGAGGTGCCCAGAGACGAACAGCCTGTTGAACTTGTGATGGGATTGATGGGCTTTGGAGAGGACAGTGTTAGACATAAGGAGGAAATATGTTGAATGAAAGGACTTCCATGGAGAGTATAATGTTGTTCCTGATGATTGATCCTGACGATTAATGTTGTAAAATGCACAGTTAAGAGTATTAATTCTGAACATATTGGCAGagccactcaaacacacacaccacacacacaatttaCCACTGTTGTACATACACACCACATCTGTGAGAGAGCTTTAATAAAGAGA

Function

NR:

description
interleukin-1 receptor type 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036959111.1 True 2338 mRNA 0.50 11 31206388 31237363

Neighbor

gene id symbol gene type direction distance location
LOC110501750 LOC106582256 coding upstream 18990 31089015 ~ 31187398 (+)
LOC110501749 LOC106582255 coding upstream 132098 31067493 ~ 31074290 (+)
LOC110501747 LOC106582251 coding upstream 166757 31037126 ~ 31039631 (+)
rl31 rl31 coding upstream 202745 30999685 ~ 31003643 (+)
LOC118943732 NA coding upstream 203767 31002485 ~ 31002621 (+)
dnajc10 LOC106582260 coding downstream 12244 31249607 ~ 31267129 (+)
LOC110501756 LOC106586411 coding downstream 127179 31364542 ~ 31366811 (+)
pde1a LOC106582264 coding downstream 220648 31458011 ~ 31535521 (+)
neurod1 LOC106582267 coding downstream 398147 31635510 ~ 31638598 (+)
cerkl cerkl coding downstream 407057 31644420 ~ 31738039 (+)
G1798551 LOC100194703 non-coding upstream 14101 31191819 ~ 31192287 (+)
G1798550 NA non-coding upstream 15244 31190791 ~ 31191144 (+)
G1798549 NA non-coding upstream 15651 31190437 ~ 31190737 (+)
G1798487 NA non-coding upstream 32614 31173142 ~ 31173774 (+)
G1798490 NA non-coding upstream 163415 31042748 ~ 31042973 (+)
G1798596 NA non-coding downstream 46728 31284091 ~ 31289666 (+)
G1798600 LOC106586471 non-coding downstream 52632 31289995 ~ 31291207 (+)
G1798604 LOC107601366 non-coding downstream 61004 31298367 ~ 31299233 (+)
G1798615 NA non-coding downstream 75729 31313092 ~ 31315028 (+)
G1798661 NA non-coding downstream 140856 31378219 ~ 31415967 (+)
G1798397 NA other upstream 315321 30888661 ~ 30891067 (+)
G1798168 NA other upstream 660434 30500656 ~ 30545954 (+)
LOC118943632 LOC100194703 other upstream 1281006 29917773 ~ 29933035 (+)
G1797582 NA other upstream 1461534 29744192 ~ 29744854 (+)
LOC110501700 LOC106582186 other upstream 2196115 28997763 ~ 29010281 (+)
G1798579 NA other downstream 9118 31246481 ~ 31292205 (+)
G1798597 NA other downstream 56189 31293552 ~ 31297419 (+)
LOC110501767 LOC106582273 other downstream 1130273 32317123 ~ 32374208 (+)
G1800754 NA other downstream 1673430 32910793 ~ 32914182 (+)
LOC110501795 LOC106596205 other downstream 4503076 35740427 ~ 35760519 (+)

Expression


Co-expression Network