XLOC_003926 (nlgn1)


Basic Information

Item Value
gene id XLOC_003926
gene name nlgn1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 9564154 ~ 9985415 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00007522
ATGCCCTTCCAACAACCAAACCGCCTGAGCAGCATCTGGAAGGCCATGTGTCCGAGGCTAGGCCTCAGTGCTAGCCTGGATCTGCCATTCTTGTGTTGGATAGTAGGCTTGGCCCTGCATGCCCAGCTGGCCGCTTCGGAAAAACTGGATGAAACGGACCCCATTGTCACTACCACTTACGGAAAAGTGCGGGGATTCAAAAAAGAACTCAATAATGAGATCTTGGGGCCTGTTATTCAGTTCCTGGGGGTTCCCTACGCAGCACCTCCAACAGGCGAAAGGCGCTTCCAGCCACCTGAACCCCCTATTTCGTGGTCAGAAATCCGCAACGCAACTCAGTTTGCCCCTGTTTGTCCACAAACCCTGCTGGAGGGCAGGCTACCGGACGTTATGCTGCCGGTTTGGTTCACCAACAGTATTGAAGTGGTGTCATCTTACGTACAGGACCAGAGTGAGGACTGCTTATTCTTAAACATATACGTGCCAACGGAGGATGtaaaaagAATATCCAAGGAATGTGCCAGAAAACCCGGCAAGAAAATATGTAGAAAAGGAGGTCCTCTTTCAAAGAAACAGAATGATGATTTAGCTGATAATGACGGTGCTGAGGATGAAGACATTCGTGAAAGCGGGAGCCCCAAACCTGTGATGGTTTTCGTTCACGGTGGATCGTACATGGAAGGAACAGGAAATATGTTCGACGGAAGCATCTTAGCCAGTTACGGCAATGTCATCGTCATAACCGTCAACTATCGGCTTGGTGTGCTCGGTTTTTTGAGCACGGGAGACCAAGCTGCCAAGGGAAACTATGGACTTCTAGATTTAATCCAGGCCCTGCGCTGGACAAGTGAAAACATTGCTTTCTTTGGGGGTGACCCTTTACGCATTACTGTATTTGGGTCTGGGGCCGGGGCCTCCTGTGTCAACCTGCTGACTCTTTCCCATTATTCTGAAGGTAACCGTTGGAGCAATTCAACCAAAGGTCTTTTCCAAAGGGCAATAGCCCAAAGTGGCACAGCCTTGTCCAGCTGGGCAGTCAGCTTCCAGCCGGCAAAGTATGCCCGCATGCTGGCCAAGAAGGTGGGGTGCAACCTCAAAGATACAGTGGAGATGGTTGAGTGCCTACAGAAAAAACACTACAAAGAACTAGTGGAGCAGGACATCCAGCCTGCTCGCTACCACATCGCCTTTGGACCTGTAATTGATGGTGATGTTATACCCGATGACCCTCAGATCCTCATGGAACAAGGGGAGTTCCTCAACTATGACATCATGCTGGGCGTCAACCAAGGCGAGGGACTGAAATTTGTGGAACTTATAGTGGACAACGAGAACGGTGTGCAGGCCAACGATTTTGACTATGCCGTGTCAAGTTTTGTGGATGATTTATATGGCTACCCTGAGGGGAAGGACATTCTGCGGGAGACCATTAAATTCATGTACACTGACTGGGCTGACCGCCACAACCCAGAGACTAGAAGAAAGACCCTGCTGGCACTCTTCACAGATCATCAGTGGGTTGCACCAGCAGTGGCCACAGCAGACCTACACTCTAGCTTTGGCTCACCTACTTATTTTTATGCCTTCTACCATCACTGCCAAACAGAGCAGGTGCCACCCTGGGCTGATGCTGCACATGGCGATGAGATCCCTTATGTGTTTGGGCTGCCCATGATCGGTCCAACTGAGCTTTTCCCATGTAACTTCTCCAAAAATGATGTTATGCTTAGTGCAGTCGTAATGACCTACTGGACCAACTTTGCCAAGACTGGTGACCCCAACCAGCCAGTTCCGCAAGACACCAAGTTCATTCACACCAAGCCTAACCGCTTTGAGGAGGTGGCCTGGACACGTTACAACCAAAAGGACCAGCTTTACTTGCACATCGGCTTGAAGCCCCGTGTCAAGGAACATTACCGTGCCAATAAGGTCAACTTATGGCTAGAGCTGGTGCCTCATCTCCACAGCCTCAACGAGGTCAGCCAGATAATTTCCACCACCAAGTTGCCTCCACCTGAGGTCACTCCCCGTACGCCAAAGAAGATCCCGGTCAACACCAAGAGACCCTACCCTACGCCGTTTCCCACTGAAACGCAGGACAGCCACAACCAGAACCAGAACCAACCTTTTTTAGTTGACCAACGGGACTACTCCACTGAACTAAGTGTCACTATTGCTGTCGGTGCTTCATTGCTGTTCCTCAACATCTTGGCATTCGCTGCACTCTACTACAAGAAGGACAAGCGAAGGCACGAGGTCCACCGACGTTGTAGCCCACAGAGGACCACAGCTAATGAGCTGCCCCATACACAAGAAGAGGAGATTATGTCTCTGCAAATGAAACACAGCGACTTGGAGCGGGAGTGCCGGGAGGCCATGCACCCGCATGAAGTGGTCCTGAGAACTGCCTGCCCACCCGATTACACACTAGCCATGCGCCGTTCGCCGGACGACATACCTCTTATGACCCCCAACACCATCACTATGATACCCAACAGCATGCCAGGCCTCACCTCCTTACACCCCTTCAACAGTTACTCCAGCGGACAGAATAACACCCTGCCCCatccacaccctcattcacactccACCACTAGAGTATAG
>TCONS_00007521
ATGCCCTTCCAACAACCAAACCGCCTGAGCAGCATCTGGAAGGCCATGTGTCCGAGGCTAGGCCTCAGTGCTAGCCTGGATCTGCCATTCTTGTGTTGGATAGTAGGCTTGGCCCTGCATGCCCAGCTGGCCGCTTCGGAAAAACTGGATGAAACGGACCCCATTGTCACTACCACTTACGGAAAAGTGCGGGGATTCAAAAAAGAACTCAATAATGAGATCTTGGGGCCTGTTATTCAGTTCCTGGGGGTTCCCTACGCAGCACCTCCAACAGGCGAAAGGCGCTTCCAGCCACCTGAACCCCCTATTTCGTGGTCAGAAATCCGCAACGCAACTCAGTTTGCCCCTGTTTGTCCACAAACCCTGCTGGAGGGCAGGCTACCGGACGTTATGCTGCCGGTTTGGTTCACCAACAGTATTGAAGTGGTGTCATCTTACGTACAGGACCAGAGTGAGGACTGCTTATTCTTAAACATATACGTGCCAACGGAGGATGtaaaaagAATATCCAAGGAATGTGCCAGAAAACCCGGCAAGAAAATATGTAGAAAAGGAGACATTCGTGAAAGCGGGAGCCCCAAACCTGTGATGGTTTTCGTTCACGGTGGATCGTACATGGAAGGAACAGGAAATATGTTCGACGGAAGCATCTTAGCCAGTTACGGCAATGTCATCGTCATAACCGTCAACTATCGGCTTGGTGTGCTCGGTTTTTTGAGCACGGGAGACCAAGCTGCCAAGGGAAACTATGGACTTCTAGATTTAATCCAGGCCCTGCGCTGGACAAGTGAAAACATTGCTTTCTTTGGGGGTGACCCTTTACGCATTACTGTATTTGGGTCTGGGGCCGGGGCCTCCTGTGTCAACCTGCTGACTCTTTCCCATTATTCTGAAGGTAACCGTTGGAGCAATTCAACCAAAGGTCTTTTCCAAAGGGCAATAGCCCAAAGTGGCACAGCCTTGTCCAGCTGGGCAGTCAGCTTCCAGCCGGCAAAGTATGCCCGCATGCTGGCCAAGAAGGTGGGGTGCAACCTCAAAGATACAGTGGAGATGGTTGAGTGCCTACAGAAAAAACACTACAAAGAACTAGTGGAGCAGGACATCCAGCCTGCTCGCTACCACATCGCCTTTGGACCTGTAATTGATGGTGATGTTATACCCGATGACCCTCAGATCCTCATGGAACAAGGGGAGTTCCTCAACTATGACATCATGCTGGGCGTCAACCAAGGCGAGGGACTGAAATTTGTGGAACTTATAGTGGACAACGAGAACGGTGTGCAGGCCAACGATTTTGACTATGCCGTGTCAAGTTTTGTGGATGATTTATATGGCTACCCTGAGGGGAAGGACATTCTGCGGGAGACCATTAAATTCATGTACACTGACTGGGCTGACCGCCACAACCCAGAGACTAGAAGAAAGACCCTGCTGGCACTCTTCACAGATCATCAGTGGGTTGCACCAGCAGTGGCCACAGCAGACCTACACTCTAGCTTTGGCTCACCTACTTATTTTTATGCCTTCTACCATCACTGCCAAACAGAGCAGGTGCCACCCTGGGCTGATGCTGCACATGGCGATGAGATCCCTTATGTGTTTGGGCTGCCCATGATCGGTCCAACTGAGCTTTTCCCATGTAACTTCTCCAAAAATGATGTTATGCTTAGTGCAGTCGTAATGACCTACTGGACCAACTTTGCCAAGACTGGTGACCCCAACCAGCCAGTTCCGCAAGACACCAAGTTCATTCACACCAAGCCTAACCGCTTTGAGGAGGTGGCCTGGACACGTTACAACCAAAAGGACCAGCTTTACTTGCACATCGGCTTGAAGCCCCGTGTCAAGGAACATTACCGTGCCAATAAGGTCAACTTATGGCTAGAGCTGGTGCCTCATCTCCACAGCCTCAACGAGGTCAGCCAGATAATTTCCACCACCAAGTTGCCTCCACCTGAGGTCACTCCCCGTACGCCAAAGAAGATCCCGGTCAACACCAAGAGACCCTACCCTACGCCGTTTCCCACTGAAACGCAGGACAGCCACAACCAGAACCAGAACCAACCTTTTTTAGTTGACCAACGGGACTACTCCACTGAACTAAGTGTCACTATTGCTGTCGGTGCTTCATTGCTGTTCCTCAACATCTTGGCATTCGCTGCACTCTACTACAAGAAGGACAAGCGAAGGCACGAGGTCCACCGACGTTGTAGCCCACAGAGGACCACAGCTAATGAGCTGCCCCATACACAAGAAGAGGAGATTATGTCTCTGCAAATGAAACACAGCGACTTGGAGCGGGAGTGCCGGGAGGCCATGCACCCGCATGAAGTGGTCCTGAGAACTGCCTGCCCACCCGATTACACACTAGCCATGCGCCGTTCGCCGGACGACATACCTCTTATGACCCCCAACACCATCACTATGATACCCAACAGCATGCCAGGCCTCACCTCCTTACACCCCTTCAACAGTTACTCCAGCGGACAGAATAACACCCTGCCCCatccacaccctcattcacactccACCACTAGAGTATAG
>TCONS_00007523
ACATTCGTGAAAGCGGGAGCCCCAAACCTGTGATGGTTTTCGTTCACGGTGGATCGTACATGGAAGGAACAGGAAATATGTTCGACGGAAGCATCTTAGCCAGTTACGGCAATGTCATCGTCATAACCGTCAACTATCGGCTTGGTGTGCTCG
>TCONS_00007524
cacacactcacctctgCCAGAGTTATCAGACAGTATCATCTCCAAATAGATATTCCACCTGAGCATCTCAATGTCAGCATTCTTCACAGTAATGTTCGATTAGATAACAATCACAACCTGTAAGACCCAAACGCCGTTATGAGTTTTAAACAGATGCACTTGGGAAAGCTTTCCAATGTCCCTTTAAAAAATATCTCCAGCAAGTGCGTTGCAGTTGCTTCAGCAGCCGCGAGGGGCGTCTTTGCTCCACTTTTGAGGCGCTCACATTCAGTTCCTCTCCGTACTGAGGGCAAGTGGAGATATCGGCATTTTATCAACCCGCGAACCCACAATCGTGAGGAAcgagggttaaaaaaaatccctCTATGGTCTTTTACCTTCATTGCGACACCTAAGGAACTGCACCGGgatgtgtgtttgtatttttttttctgatgagaCGACGGATTGTGGATTAACATCAGTCTTAAAACTGCATTAGGGAAATCATATGCTGTTTTACTCTGCGAAATAGTTGGACCGAATCATGTCGCTGTCACAAATGTTTCCTGCTTGAGCTTTTTCTTCGTTTGGATTGTATTTTCTCCCTCCTGCTGCCACCGTCATTAGTGGAAGAAGCACTCTGGAAATGTTGGAAATGGCAAAGAGTATTGGAAATAGAGCTTCATGGATATAGACCAACCACTGCACCGGACTTGATTTATCTGCGGACGACCTGCCACAAATGCCTCCCCCACCCCTGCCCCGCACGTAGCCAAGATGGAAATCTACACTGTCAATAGGATGGGACCTGACGAATAGCTGGCTTCCTGATGAAGATGTTACTTGGATCTGTATTTCAATCCATGTGGGAATACTTGCCATGCAAAGAGGCTTTGAGATTTTTGACAGCTTCACTCTTGGAACGTCTGACATCTTGGGTTTGATTGCTTTCTTTTGTGCGAGTGGATCTAAACTACCGCCGCTGCTGTTAGCGGGACTAGCGTGAAGAGGATTAAACCATGCCCTTCCAACAACCAAACCGCCTGAGCAGCATCTGGAAGGCCATGTGTCCGAGGCTAGGCCTCAGTGCTAGCCTGGATCTGCCATTCTTGTGTTGGATAGTAGGCTTGGCCCTGCATGCCCAGCTGGCCGCTTCGGAAAAACTGGATGAAACGGACCCCATTGTCACTACCACTTACGGAAAAGTGCGGGGATTCAAAAAAGAACTCAATAATGAGATCTTGGGGCCTGTTATTCAGTTCCTGGGGGTTCCCTACGCAGCACCTCCAACAGGCGAAAGGCGCTTCCAGCCACCTGAACCCCCTATTTCGTGGTCAGAAATCCGCAACGCAACTCAGTTTGCCCCTGTTTGTCCACAAACCCTGCTGGAGGGCAGGCTACCGGACGTTATGCTGCCGGTTTGGTTCACCAACAGTATTGAAGTGGTGTCATCTTACGTACAGGACCAGAGTGAGGACTGCTTATTCTTAAACATATACGTGCCAACGGAGGATGtaaaaagAATATCCAAGGAATGTGCCAGAAAACCCGGCAAGAAAATATGTAGAAAAGGAGATATCAGCTCCCTGAGGTCAAGAGAAGAAGCCATAATTGATTCCCACCACGAAGAGTTAACAGGGGAGACCGAGCCGTCTCTTAAATCAGATGGGCACACGTTGAACTTGCAGAGTCTAATCTCAATTAAAAGAGATGCTATCTGGATTTCATTGGCTTACACTGGCTATATTGATCACAGCTTCATCAAGATAATGTCTCTAGCTTCCCAACCCTGGCATGCCTTACCTCAGCCCATCGAGTTTGGCGACAGCTCACCTTATATAAAGTATCCCGTTAATACGACCTCTCTGGCGACAAGAACAATCATAAAACGTTCCTGCTGGGGAACATTGTCCAATCTCGATAttgcgaaataaaacaaatctaccCCCAAAAACGTATACCTACAGTTAGCCATGCAGTGTTTGAAGGTATAGCTCAACACAAAGTTAAAATGATCATCATTTAGCGACCCTTACCTTATTTTAGAAGTCAGTAATAACCTTTGACCAGGGCAAGGGTAAGCAAGTTCGGTTCTATGCAGCGATATTCTTGCAGAGTGTTGATCTGGCGTTCAGACAGTAGCTCTTTAGAACCAAACTTCCTTAcccttaaaggaacacttcagttttcaaaaataaatactcaacttgagttaaacagt

Function

symbol description
nlgn1 Predicted to enable neurexin family protein binding activity and signaling receptor activity. Acts upstream of or within sprouting angiogenesis. Predicted to be located in excitatory synapse and plasma membrane. Predicted to be integral component of membrane. Predicted to be active in cell surface and synapse. Predicted to be integral component of plasma membrane. Is expressed in several structures, including brain; cardiovascular system; eye; gonad; and swim bladder. Orthologous to human NLGN1 (neuroligin 1).

GO:

id name namespace
GO:0048488 synaptic vesicle endocytosis biological_process
GO:0002040 sprouting angiogenesis biological_process
GO:0097104 postsynaptic membrane assembly biological_process
GO:0097105 presynaptic membrane assembly biological_process
GO:0007268 chemical synaptic transmission biological_process
GO:0050804 modulation of chemical synaptic transmission biological_process
GO:0050808 synapse organization biological_process
GO:0007155 cell adhesion biological_process
GO:0007158 neuron cell-cell adhesion biological_process
GO:0060076 excitatory synapse cellular_component
GO:0045202 synapse cellular_component
GO:0005887 integral component of plasma membrane cellular_component
GO:0009986 cell surface cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0038023 signaling receptor activity molecular_function
GO:0042043 neurexin family protein binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-090918-1 Predicted to enable neurexin family protein binding activity and signaling receptor activity. Acts upstream of or within sprouting angiogenesis. Predicted to be located in excitatory synapse and plasma membrane. Predicted to be integral component of membrane. Predicted to be active in cell surface and synapse. Predicted to be integral component of plasma membrane. Is expressed in several structures, including brain; cardiovascular system; eye; gonad; and swim bladder. Orthologous to human NLGN1 (neuroligin 1).

Ensembl:

ensembl_id ENSDARG00000077710

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00007522 False 2604 mRNA 0.51 7 9564154 9948487
TCONS_00007521 False 2544 mRNA 0.51 6 9564154 9948487
TCONS_00007523 False 153 mRNA 0.50 1 9808204 9808356
TCONS_00007524 True 2203 mRNA 0.46 4 9946682 9985415

Neighbor

gene id symbol gene type direction distance location
XLOC_003922 NA coding downstream 40970 8983651 ~ 9523184 (-)
XLOC_003925 NA coding downstream 156149 9407671 ~ 9408005 (-)
XLOC_003924 CR788237.1 coding downstream 270743 9292281 ~ 9293411 (-)
XLOC_003923 CR788237.2 coding downstream 277678 9285823 ~ 9286476 (-)
XLOC_003921 si:ch211-51h4.2 coding downstream 781283 8635785 ~ 8782871 (-)
XLOC_003927 NA coding upstream 319715 10305130 ~ 10328527 (-)
XLOC_003928 ect2 coding upstream 402888 10388303 ~ 10456553 (-)
XLOC_003929 mcf2l2 coding upstream 481884 10467299 ~ 10663122 (-)
XLOC_003930 slc4a10a coding upstream 684046 10669461 ~ 10798064 (-)
XLOC_003931 tbr1a coding upstream 827534 10812949 ~ 10828539 (-)
XLOC_003938 BX324177.10 misc upstream 1353389 11338804 ~ 11339100 (-)
XLOC_003942 BX324177.17 misc upstream 1382179 11367594 ~ 11367890 (-)
XLOC_003943 BX324177.3 misc upstream 1385040 11370455 ~ 11370653 (-)
XLOC_003944 BX324177.4 misc upstream 1395489 11380904 ~ 11381204 (-)
XLOC_003945 BX324177.6 misc upstream 1398418 11383833 ~ 11384130 (-)
XLOC_003920 CR847563.2 non-coding downstream 1048404 8476961 ~ 8515750 (-)
XLOC_003933 CR678435.1 non-coding upstream 873609 10859024 ~ 10860106 (-)
XLOC_003939 NA non-coding upstream 1357865 11343280 ~ 11343574 (-)
XLOC_003940 NA non-coding upstream 1368559 11353974 ~ 11354268 (-)
XLOC_003941 NA non-coding upstream 1371478 11356893 ~ 11357187 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000056_01292701_01294007 NA coding CI01000056 null 1292643 ~ 1294074 (-)