Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00007524 |
| length | 2203 |
| RNA type | mRNA |
| GC content | 0.46 |
| exon number | 4 |
| gene id | XLOC_003926 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007122.7 |
| NCBI id | CM002895.2 |
| chromosome length | 45484837 |
| location | 9564154 ~ 9985415 (-) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0048488 | synaptic vesicle endocytosis | biological_process |
| GO:0002040 | sprouting angiogenesis | biological_process |
| GO:0097104 | postsynaptic membrane assembly | biological_process |
| GO:0097105 | presynaptic membrane assembly | biological_process |
| GO:0007268 | chemical synaptic transmission | biological_process |
| GO:0050804 | modulation of chemical synaptic transmission | biological_process |
| GO:0050808 | synapse organization | biological_process |
| GO:0007155 | cell adhesion | biological_process |
| GO:0007158 | neuron cell-cell adhesion | biological_process |
| GO:0060076 | excitatory synapse | cellular_component |
| GO:0045202 | synapse | cellular_component |
| GO:0005887 | integral component of plasma membrane | cellular_component |
| GO:0009986 | cell surface | cellular_component |
| GO:0016020 | membrane | cellular_component |
| GO:0016021 | integral component of membrane | cellular_component |
| GO:0038023 | signaling receptor activity | molecular_function |
| GO:0042043 | neurexin family protein binding | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-090918-1 | Predicted to enable neurexin family protein binding activity and signaling receptor activity. Acts upstream of or within sprouting angiogenesis. Predicted to be located in excitatory synapse and plasma membrane. Predicted to be integral component of membrane. Predicted to be active in cell surface and synapse. Predicted to be integral component of plasma membrane. Is expressed in several structures, including brain; cardiovascular system; eye; gonad; and swim bladder. Orthologous to human NLGN1 (neuroligin 1). |
| ensembl_id | ENSDART00000123359 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00008455 | lncRNA | downstream | 423498 | 9521226 ~ 9523184 (-) | True | XLOC_003922 |
| TCONS_00008766 | lncRNA | downstream | 424065 | 9510569 ~ 9522617 (-) | False | XLOC_003922 |
| TCONS_00008765 | lncRNA | downstream | 424116 | 9510569 ~ 9522566 (-) | False | XLOC_003922 |
| TCONS_00008767 | lncRNA | downstream | 424133 | 9512829 ~ 9522549 (-) | False | XLOC_003922 |
| TCONS_00008454 | lncRNA | downstream | 433411 | 9510189 ~ 9513271 (-) | False | XLOC_003922 |
| TCONS_00008768 | lncRNA | upstream | 319715 | 10305130 ~ 10328527 (-) | True | XLOC_003927 |
| TCONS_00007541 | lncRNA | upstream | 873609 | 10859024 ~ 10860106 (-) | True | XLOC_003933 |
| TCONS_00007547 | lncRNA | upstream | 1333775 | 11319190 ~ 11325620 (-) | False | XLOC_003936 |
| TCONS_00008456 | lncRNA | upstream | 1357865 | 11343280 ~ 11343574 (-) | True | XLOC_003939 |
| TCONS_00008457 | lncRNA | upstream | 1368559 | 11353974 ~ 11354268 (-) | True | XLOC_003940 |
| TCONS_00007523 | mRNA | downstream | 138326 | 9808204 ~ 9808356 (-) | False | XLOC_003926 |
| TCONS_00007515 | mRNA | downstream | 1163811 | 8635785 ~ 8782871 (-) | True | XLOC_003921 |
| TCONS_00007512 | mRNA | downstream | 1595737 | 8306007 ~ 8350945 (-) | True | XLOC_003919 |
| TCONS_00007511 | mRNA | downstream | 1625814 | 8303941 ~ 8320868 (-) | False | XLOC_003919 |
| TCONS_00007509 | mRNA | downstream | 1657757 | 8284686 ~ 8288925 (-) | False | XLOC_003918 |
| TCONS_00007525 | mRNA | upstream | 402888 | 10388303 ~ 10456553 (-) | False | XLOC_003928 |
| TCONS_00007526 | mRNA | upstream | 403222 | 10388637 ~ 10456388 (-) | False | XLOC_003928 |
| TCONS_00007527 | mRNA | upstream | 403959 | 10389374 ~ 10456387 (-) | False | XLOC_003928 |
| TCONS_00007529 | mRNA | upstream | 406248 | 10391663 ~ 10456553 (-) | False | XLOC_003928 |
| TCONS_00007528 | mRNA | upstream | 406248 | 10391663 ~ 10456553 (-) | True | XLOC_003928 |
| TCONS_00007494 | other | downstream | 1820487 | 8111369 ~ 8126195 (-) | True | XLOC_003913 |
| TCONS_00007477 | other | downstream | 2830319 | 7116247 ~ 7116363 (-) | True | XLOC_003904 |
| TCONS_00007463 | other | downstream | 2998664 | 6944300 ~ 6948018 (-) | False | XLOC_003898 |
| TCONS_00007456 | other | downstream | 3164606 | 6780708 ~ 6782076 (-) | True | XLOC_003894 |
| TCONS_00007441 | other | downstream | 3740093 | 6197276 ~ 6206589 (-) | False | XLOC_003884 |
| TCONS_00007548 | other | upstream | 1340107 | 11325522 ~ 11331050 (-) | False | XLOC_003936 |
| TCONS_00007549 | other | upstream | 1345310 | 11330725 ~ 11331090 (-) | True | XLOC_003936 |
| TCONS_00007551 | other | upstream | 1353389 | 11338804 ~ 11339100 (-) | True | XLOC_003938 |
| TCONS_00007552 | other | upstream | 1382179 | 11367594 ~ 11367890 (-) | True | XLOC_003942 |
| TCONS_00007553 | other | upstream | 1385040 | 11370455 ~ 11370653 (-) | True | XLOC_003943 |
| species | RNA id | representative | length | rna type | GC content | exon number | chromosome id | location |
|---|---|---|---|---|---|---|---|---|
| grasscarp (Ctenopharyngodon idella) | CI01000056_01292701_01294007.mRNA | True | 1016 | mRNA | 0.51 | 3 | CI01000056 | 1292643 ~ 1294074 (-) |
