RNA id: TCONS_00007512


Basic Information

Item Value
RNA id TCONS_00007512
length 1652
RNA type mRNA
GC content 0.47
exon number 7
gene id XLOC_003919
representative True

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 8303941 ~ 8350945 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTCTTGTTGCAGCAGCAGTCATCTGAAACATTTTGAGCACACTGGCTTACACTCAGCGTTAGCACGTCTCTCTCACTAATAGTGCTCTTTGCGAACAGGCTTAACCAATAGCACATCTGCAGAAAAGTTTAAAACGCCGCTGACAAACACAATCGCCTGGTAGGAATGGGATTATCGGCCAGGTAATCCGGTAAAAGAACAAAGACACCTGAAGAAACACAAGATCCTGGAGGGACTGATAAATGGATTTGCTGTAGTGCGGCTACAGTTTGTGTCGCACCACCAGCAGTGTTTTGCAAGTGCTTAAGAGAGAGACGGTCACTGTGGAAGAGCGGGGAGAATGTTTCTGTGGGCTGGAAGCAAAGCAGCTCAAGGATCAGGAAGTGAGAGAAGCAGGACGATTTATCAGAAGATTCGAGAGTATGATATTTTGGAGAAGAGGAGGACGGTGACCGCGCTGAAGGCTGGAGAGGACAGAGCCATTCTCTTAGGCCTCAGCATGATCCTATGCTCCGCCATGATGTACTTTGTGTTGGGCATCACAATGGTGCGTTCTTACTCAGACAGTGTTTGGACAGAGGAGTCAAACTGCACAGTGTTGAACTCGAGTGTAGTTGCTGAGATTAACTGTAGCTACAGCTGTGGTTCAGAGTGCCGGAAAAGCTCCAGGTATCCCTGTCTTCAAGTGTATGTCAGTTTGGACTCTGGTAAAGTTCAGCGGCTCTCATACAACGAGGAAGCGCATGAGGCCAATCCTGAGTGTTTTTACATCCCAAAGTGCCGAAAGGAGCAAACACTAATGCACACCATAGTGATGAACATCTCGGAGCGGCTCAAGATGCACCAGCAGGTTCTGTGTTATTATGACCCCTCAGAGCAGCAGGACGGCGTACTTCTGACACGTCTCTACGGCCGCGGAGCGATCATCAGCTCGCTCCTTTGGCCCACATGCACCCTTGTCGGGGGAACGCTTATCATCGCAATGGTGAAGCTCACTCAATACCTGTCCTTCCTGTGCGAGCAGATCAGCCGCATTAAAAGGATGGGGCTTTACTCCTTAAGAGGAGCTTCTCATGCTCAGGTCTGCACCCGGAAGTTTAACGGCGGCATCCAGGATGTGGTTTGATATGCGAATTTGGACCTGTCTCCTACTCAACAAAGTGTTTTGCCTGTTATGTTGTCTTCCTCCTGCTTTGTCCATCTGTCCGGGTTGTGCTGACAAGGATggagtatttttatttgtatttttttgtgaatGAAAACTTCTTGAGGATCAATAGAGCCCCTAGTATTTGGAACTTCATGCTACCAGACTGGGTCAAGTCTGATTTTGAAACTCAAGGGTCAAAATCTGTGGTCATGTTGTGGGGTGTTGATTACACTTTTAGACCACCGGATTGCAGAGAGTCCTTTCCAAGAAGATGCCACTGTGTAGGAATAGGTCTCGACCAGTTGGCTTGAATGTAATCATGGAAATTAATAGTATGCTTTGAACACACTACTTCAAACAGAAGTGACGGCTGTCATTCATGGCTCTTTGACAAACACTTGTGGAGTACTTCAGAGCCAAAGTCATTTGTTGCTTGTTACAGTGTatcttttaaagggcacctatggtgaaaaatctacttttcaagctgatGGGACAGACA

Function

GO:

id name namespace
GO:0006813 potassium ion transport biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0015269 calcium-activated potassium channel activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-141216-101 Predicted to enable calcium-activated potassium channel activity. Predicted to act upstream of or within potassium ion transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Human ortholog(s) of this gene implicated in hypertension. Orthologous to several human genes including KCNMB2 (potassium calcium-activated channel subfamily M regulatory beta subunit 2).

Ensembl:

ensembl_id ENSDART00000052698

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00007510 lncRNA downstream 20115 8284885 ~ 8285892 (-) True XLOC_003918
TCONS_00007508 lncRNA downstream 37671 8267161 ~ 8268336 (-) True XLOC_003916
TCONS_00007504 lncRNA downstream 64805 8240025 ~ 8241202 (-) True XLOC_003917
TCONS_00007501 lncRNA downstream 82955 8221872 ~ 8223052 (-) False XLOC_003916
TCONS_00007499 lncRNA downstream 101148 8201885 ~ 8204859 (-) True XLOC_003915
TCONS_00007513 lncRNA upstream 126016 8476961 ~ 8515378 (-) False XLOC_003920
TCONS_00008761 lncRNA upstream 126080 8477025 ~ 8515693 (-) False XLOC_003920
TCONS_00007514 lncRNA upstream 132874 8483819 ~ 8515378 (-) False XLOC_003920
TCONS_00008762 lncRNA upstream 132892 8483837 ~ 8515748 (-) False XLOC_003920
TCONS_00008763 lncRNA upstream 132892 8483837 ~ 8515750 (-) True XLOC_003920
TCONS_00007509 mRNA downstream 17082 8284686 ~ 8288925 (-) False XLOC_003918
TCONS_00007507 mRNA downstream 34633 8267118 ~ 8271374 (-) False XLOC_003916
TCONS_00007505 mRNA downstream 36780 8256292 ~ 8269227 (-) False XLOC_003916
TCONS_00007506 mRNA downstream 36780 8266504 ~ 8269227 (-) False XLOC_003916
TCONS_00007503 mRNA downstream 43902 8239982 ~ 8262105 (-) False XLOC_003917
TCONS_00007515 mRNA upstream 284840 8635785 ~ 8782871 (-) True XLOC_003921
TCONS_00007522 mRNA upstream 1213209 9564154 ~ 9948487 (-) False XLOC_003926
TCONS_00007521 mRNA upstream 1213209 9564154 ~ 9948487 (-) False XLOC_003926
TCONS_00007523 mRNA upstream 1457259 9808204 ~ 9808356 (-) False XLOC_003926
TCONS_00007524 mRNA upstream 1595737 9946682 ~ 9985415 (-) True XLOC_003926
TCONS_00007494 other downstream 179812 8111369 ~ 8126195 (-) True XLOC_003913
TCONS_00007477 other downstream 1189644 7116247 ~ 7116363 (-) True XLOC_003904
TCONS_00007463 other downstream 1357989 6944300 ~ 6948018 (-) False XLOC_003898
TCONS_00007456 other downstream 1523931 6780708 ~ 6782076 (-) True XLOC_003894
TCONS_00007441 other downstream 2099418 6197276 ~ 6206589 (-) False XLOC_003884
TCONS_00007548 other upstream 2974577 11325522 ~ 11331050 (-) False XLOC_003936
TCONS_00007549 other upstream 2979780 11330725 ~ 11331090 (-) True XLOC_003936
TCONS_00007551 other upstream 2987859 11338804 ~ 11339100 (-) True XLOC_003938
TCONS_00007552 other upstream 3016649 11367594 ~ 11367890 (-) True XLOC_003942
TCONS_00007553 other upstream 3019510 11370455 ~ 11370653 (-) True XLOC_003943

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000056_00392800_00402925.mRNA True 2021 mRNA 0.44 5 CI01000056 391693 ~ 403059 (-)